Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.280083	Rpl4	ribosomal protein L4	9		67891
Gene Ontology	intracellular | metabolism | oxidoreductase activity | protein biosynthesis | ribosome | structural constituent of ribosome
Human Homolog	RPL4[ribosomal protein L4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 200 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTGACAAA 177.8 0.1778 P8 Cb GC TGGTGACTAA (2) 13.1 0.0131 P8 Cb GC GTCAAACTTA 4.9 0.0049 P8 Cb GC TTTGAAACTG (3) 4.9 0.0049 P8 Cb GC TGAAAGAGCT (3) 3.3 0.0033 P8 Cb GC TGGTGAAAAA (2) 3.3 0.0033 P8 Cb GC TGGGCCGTTT 1.6 0.0016 P8 Cb GC TGGTGGCAAA 1.6 0.0016 P8 Cb GC TTGAAGCTGA 1.6 0.0016 P8 Cb GC TTTGCACCAA (2) 1.6 0.0016 Cb medulloblastoma TGGTGACAAA 152.6 0.1526 Cb medulloblastoma TGGTGAAAAA (2) 6.9 0.0069 Cb medulloblastoma TGGCGACAAA 4.6 0.0046 Cb medulloblastoma TGGTAAAAAA 4.6 0.0046 Cb medulloblastoma TGGTGACTAA (2) 4.6 0.0046 Cb medulloblastoma TGGTGGCCAA 4.6 0.0046 Cb medulloblastoma CTTGCACCAA 2.3 0.0023 Cb medulloblastoma GTCAAACTTA 2.3 0.0023 Cb medulloblastoma TGGCAAAAAA (3) 2.3 0.0023 P8 GC+1d culture TGGTGACAAA 151.8 0.1518 P8 GC+1d culture TGGTGACTAA (2) 8 0.008 P8 GC+1d culture TGGTGAAAAA (2) 4.6 0.0046 P8 GC+1d culture GTCAAACTTA 2.3 0.0023 P8 GC+1d culture TGGCGACAAA 2.3 0.0023 P8 GC+1d culture TTTGAAACTG (3) 2.3 0.0023 P8 GC+1d culture TTTGATTTAT 2.3 0.0023 P8 GC+1d culture TTTGCACCAA (2) 2.3 0.0023 P8 GC+1d culture GCTTGTGCCC (2) 1.1 0.0011 P8 GC+1d culture TGATAAAAAA 1.1 0.0011 P8 GC+1d culture TGGTAAAAAA 1.1 0.0011 P8 GC+1d culture TGGTGACAAG 1.1 0.0011 P8 GC+1d culture TGGTGACGAA 1.1 0.0011 P8 GC+SHH+1d culture TGGTGACAAA 249.4 0.2494 P8 GC+SHH+1d culture TGGTGACTAA (2) 11.7 0.0117 P8 GC+SHH+1d culture TGGCAAAAAA (3) 5.9 0.0059 P8 GC+SHH+1d culture TGGTGAAAAA (2) 5.9 0.0059 P8 GC+SHH+1d culture TTTGATTTAT 3.5 0.0035 P8 GC+SHH+1d culture GTCAAACTTA 2.3 0.0023 P8 GC+SHH+1d culture TGGTGACAAG 2.3 0.0023 P8 GC+SHH+1d culture TGGTGGCAAA 2.3 0.0023 P8 GC+SHH+1d culture CTTGCACCAA 1.2 0.0012 P8 GC+SHH+1d culture TGGCGACAAA 1.2 0.0012 P8 GC+SHH+1d culture TGGGCCGTTT 1.2 0.0012 P8 GC+SHH+1d culture TGGTAAAAAA 1.2 0.0012 P8 GC+SHH+1d culture TGGTGGCCAA 1.2 0.0012 P8 GC+SHH+1d culture TTGAAGCTGA 1.2 0.0012 P8 GC+SHH+1d culture TTTGCACCAA (2) 1.2 0.0012 3T3 fibroblasts TGGTGACAAA 38.6 0.0386 3T3 fibroblasts TGGTGACTAA (2) 3.5 0.0035 3T3 fibroblasts TTTGCACCAA (2) 3.5 0.0035 E15 cortex TGGTGACAAA 54.4 0.0544 E15 cortex TGGTGACTAA (2) 9.9 0.0099 E15 cortex TAGAAGCTGA 4.9 0.0049 E15 cortex TGGGACAAAA 4.9 0.0049 E15 cortex TGGTGAAAAA (2) 4.9 0.0049 E15 cortex TGGTGCCCAA 4.9 0.0049 E15 cortex TTTGAAACTG (3) 4.9 0.0049 P1 cortex TGGTGACAAA 22.7 0.0227 P1 cortex TGGTGACTAA (2) 18.2 0.0182 P1 cortex TGGGACAAAA 4.5 0.0045 P1 cortex TGGTGCCCAA 4.5 0.0045 P1 cortex TGGTGGCAAA 4.5 0.0045 P1 cortex TTGAAGCTGA 4.5 0.0045 P1 cortex TTTGAAACTG (3) 4.5 0.0045 Hypothalamus TGGTGACAAA 193.8 0.1938 Hypothalamus TGGTGAAAAA (2) 10.9 0.0109 Hypothalamus TTTGATTTAT 7.2 0.0072 Hypothalamus TGGTGACTAA (2) 3.6 0.0036 Hypothalamus TGGTGGCCAA 3.6 0.0036 Hypothalamus TAGAAGCTGA 1.8 0.0018 Hypothalamus TGGCAAAAAA (3) 1.8 0.0018 Hypothalamus TGGCGACAAA 1.8 0.0018 Hypothalamus TGGGCCGTTT 1.8 0.0018 Hypothalamus TGGTGCAAAA 1.8 0.0018 Hypothalamus TGGTGCCAAA 1.8 0.0018 Hypothalamus TGGTGCCCAA 1.8 0.0018 Hypothalamus TGGTGGCAAA 1.8 0.0018 Hypothalamus TTGAAGCTGA 1.8 0.0018 E12.5 retina TGGTGACAAA 289.1 0.2891 E12.5 retina TGGTGACTAA (2) 26.3 0.0263 E12.5 retina GTCAAACTTA 9.4 0.0094 E12.5 retina TTTGATTTAT 5.6 0.0056 E12.5 retina GCTTGTGCCC (2) 1.9 0.0019 E12.5 retina TGGGACAAAA 1.9 0.0019 E12.5 retina TGGTGAAAAA (2) 1.9 0.0019 E12.5 retina TGGTGCAAAA 1.9 0.0019 E14.5 retina TGGTGACAAA 317 0.317 E14.5 retina TTTGATTTAT 27.3 0.0273 E14.5 retina TGGTGACTAA (2) 20 0.02 E14.5 retina GTCAAACTTA 9.1 0.0091 E14.5 retina TGGTGAAAAA (2) 9.1 0.0091 E14.5 retina TGGTGCAAAA 5.5 0.0055 E14.5 retina TTGAAGCTGA 5.5 0.0055 E14.5 retina ATTCTCAGGT 3.6 0.0036 E14.5 retina TGGTGGCCAA 3.6 0.0036 E14.5 retina TTTGAAACTG (3) 3.6 0.0036 E14.5 retina CACAAGATGA 1.8 0.0018 E14.5 retina GCTTGTGCCC (2) 1.8 0.0018 E14.5 retina TGGTAAAAAA 1.8 0.0018 E14.5 retina TGGTGACAAG 1.8 0.0018 E14.5 retina TGGTGGCAAA 1.8 0.0018 E16.5 retina TGGTGACAAA 195.6 0.1956 E16.5 retina TGGTGACTAA (2) 21.7 0.0217 E16.5 retina TTTGATTTAT 18.1 0.0181 E16.5 retina ATTCTCAGGT 7.2 0.0072 E16.5 retina TGGTGAAAAA (2) 7.2 0.0072 E16.5 retina GTCAAACTTA 5.4 0.0054 E16.5 retina TGGTGGCCAA 5.4 0.0054 E16.5 retina TTTGAAACTG (3) 5.4 0.0054 E16.5 retina TGGCAAAAAA (3) 3.6 0.0036 E16.5 retina TGGCGACAAA 3.6 0.0036 E16.5 retina TGGGCCGTTT 3.6 0.0036 E16.5 retina CACAAGATGA 1.8 0.0018 E16.5 retina TGAAAGAGCT (3) 1.8 0.0018 E16.5 retina TGGTGACGAA 1.8 0.0018 E16.5 retina TTGAAGCTGA 1.8 0.0018 E18.5 retina TGGTGACAAA 431.1 0.4311 E18.5 retina TGGTGAAAAA (2) 10.9 0.0109 E18.5 retina GTCAAACTTA 7.3 0.0073 E18.5 retina TGGTGACTAA (2) 7.3 0.0073 E18.5 retina TGGCAAAAAA (3) 5.5 0.0055 E18.5 retina TGGTGCCAAA 3.6 0.0036 E18.5 retina TGGTGGCCAA 3.6 0.0036 E18.5 retina TTTGATTTAT 3.6 0.0036 E18.5 retina TAGAAGCTGA 1.8 0.0018 E18.5 retina TGAAAGAGCT (3) 1.8 0.0018 E18.5 retina TGATAAAAAA 1.8 0.0018 E18.5 retina TGGCGACAAA 1.8 0.0018 E18.5 retina TGGTGACAAG 1.8 0.0018 E18.5 retina TGGTGCCCAA 1.8 0.0018 E18.5 retina TTTGAAACTG (3) 1.8 0.0018 P0.5 retina TGGTGACAAA 135.4 0.1354 P0.5 retina TGGCGACAAA 5.9 0.0059 P0.5 retina TGGTGACTAA (2) 5.9 0.0059 P0.5 retina TGGTGGCAAA 3.9 0.0039 P0.5 retina GTCAAACTTA 2 0.002 P0.5 retina TGGCAAAAAA (3) 2 0.002 P0.5 retina TGGGCCGTTT 2 0.002 P0.5 retina TGGTAAAAAA 2 0.002 P0.5 retina TGGTGCCAAA 2 0.002 P0.5 retina TGGTGGCCAA 2 0.002 P0.5 retina TTGAAGCTGA 2 0.002 P0.5 retina TTTGAAACTG (3) 2 0.002 P2.5 retina TGGTGACAAA 161.9 0.1619 P2.5 retina TGGTGACTAA (2) 7 0.007 P2.5 retina TTTGAAACTG (3) 5.3 0.0053 P2.5 retina GTCAAACTTA 3.5 0.0035 P2.5 retina TGGCAAAAAA (3) 1.8 0.0018 P2.5 retina TGGTGACAAG 1.8 0.0018 P2.5 retina TGGTGGCAAA 1.8 0.0018 P2.5 retina TTGAAGCTGA 1.8 0.0018 P4.5 retina TGGTGACAAA 196.2 0.1962 P4.5 retina TGGTGACTAA (2) 9.9 0.0099 P4.5 retina GTCAAACTTA 5.9 0.0059 P4.5 retina TGATAAAAAA 4 0.004 P4.5 retina TGGCAAAAAA (3) 4 0.004 P4.5 retina TGGTGAAAAA (2) 2 0.002 P4.5 retina TGGTGGCAAA 2 0.002 P4.5 retina TGGTGGCCAA 2 0.002 P6.5 retina TGGTGACAAA 163.4 0.1634 P6.5 retina TTTGAAACTG (3) 6.7 0.0067 P6.5 retina TGGTGACTAA (2) 5 0.005 P6.5 retina TGGTGAAAAA (2) 3.3 0.0033 P6.5 retina TGAAAGAGCT (3) 1.7 0.0017 P6.5 retina TGGCGACAAA 1.7 0.0017 P6.5 retina TTTGCACCAA (2) 1.7 0.0017 P10.5 crx- retina TGGTGACAAA 53.9 0.0539 P10.5 crx- retina TTTGAAACTG (3) 11.1 0.0111 P10.5 crx- retina GTCAAACTTA 3.7 0.0037 P10.5 crx- retina TGGTGGCCAA 3.7 0.0037 P10.5 crx- retina TTTGCACCAA (2) 3.7 0.0037 P10.5 crx- retina CACAAGATGA 1.9 0.0019 P10.5 crx- retina CTTGCACCAA 1.9 0.0019 P10.5 crx- retina GCTTGTGCCC (2) 1.9 0.0019 P10.5 crx- retina TGAAAGAGCT (3) 1.9 0.0019 P10.5 crx- retina TGGTGAAAAA (2) 1.9 0.0019 P10.5 crx- retina TGGTGACTAA (2) 1.9 0.0019 P10.5 crx- retina TTGAAGCTGA 1.9 0.0019 P10.5 crx- retina TTTGATTTAT 1.9 0.0019 P10.5 crx+ retina TGGTGACAAA 150 0.15 P10.5 crx+ retina TGGTGACTAA (2) 7.7 0.0077 P10.5 crx+ retina TGGTGAAAAA (2) 3.8 0.0038 P10.5 crx+ retina GCTTGTGCCC (2) 1.9 0.0019 P10.5 crx+ retina GTCAAACTTA 1.9 0.0019 P10.5 crx+ retina TGATAAAAAA 1.9 0.0019 P10.5 crx+ retina TGGTAAAAAA 1.9 0.0019 P10.5 crx+ retina TTTGAAACTG (3) 1.9 0.0019 P10.5 crx+ retina TTTGATTTAT 1.9 0.0019 Adult retinal TGGTGACAAA 55.5 0.0555 Adult retinal TGGTGAAAAA (2) 3.7 0.0037 Adult retinal TAGAAGCTGA 1.9 0.0019 Adult retinal TGAAAGAGCT (3) 1.9 0.0019 Adult retinal TGGTAAAAAA 1.9 0.0019 Adult retinal TGGTGACAAG 1.9 0.0019 Adult retinal TGGTGACTAA (2) 1.9 0.0019 Adult retinal TGGTGCAAAA 1.9 0.0019 Adult retinal TTTGAAACTG (3) 1.9 0.0019 ONL TGGTGACAAA 42.1 0.0421 ONL TGGCAAAAAA (3) 1.9 0.0019 ONL TGGTGAAAAA (2) 1.9 0.0019