Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.280083	Rpl4	ribosomal protein L4	9		67891
Gene Ontology	intracellular | metabolism | oxidoreductase activity | protein biosynthesis | ribosome | structural constituent of ribosome
Human Homolog	RPL4[ribosomal protein L4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 402 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGTGTGAAG (3) ACTCTCTTCA (3) CTACAAGAAA GGCAGGTTAT (3) GGGGGCCGGT GTCAAACTTA TATCTTGGCA TGAAAGAGCT (3) TGGAAGGCGG TGGCCCTCTG (3) TGGCGTTCTC TGGGCCGTTT TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TGGTGGCAAA TTGAAGCTGA TTTGAAACTG (3) TTTGCACCAA (2) TTTTCACCAA 285.4 0.2854 Cb medulloblastoma ACTCTCTTCA (3) CTTGCACCAA GGCAGGTTAT (3) GGGGGGGGGG GTCAAACTTA TATCTTGGCA TGCAAACAGA (2) TGGCAAAAAA (3) TGGCCCTCTG (3) TGGCGACAAA TGGTAAAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TGGTGGCCAA TTATCATCAA TTTACACCAA 244.8 0.2448 P8 GC+1d culture AACATTAGGA AAGTGTGAAG (3) ACTCTCTTCA (3) GCACAGATGA (2) GCTTGTGCCC (2) GGCAGGTTAT (3) GGGGGCCGGT GGGGGGGGGG GTCAAACTTA TATCTTGGCA TGATAAAAAA TGGCCCTCTG (3) TGGCGACAAA TGGCGTTCTC TGGTAAAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACAAG TGGTGACGAA TGGTGACTAA (2) TTGAAACTGG TTGGTGACAA TTTGAAACTG (3) TTTGAATTAT TTTGATTTAT TTTGCACCAA (2) 247.4 0.2474 P8 GC+SHH+1d culture ACTCTCTTCA (3) CTTGCACCAA GGGGGCCGGT GGGGGGGGGG GTCAAACTTA TATCTTGGCA TGCAAACAGA (2) TGGCAAAAAA (3) TGGCCCTCTG (3) TGGCGACAAA TGGCGTTCTC TGGGCCGTTT TGGTAAAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACAAG TGGTGACTAA (2) TGGTGGCAAA TGGTGGCCAA TTGAAACTGG TTGAAGCTGA TTTGAATTAT TTTGATTTAT TTTGCACCAA (2) 356.2 0.3562 3T3 fibroblasts CAAAAGGTCT (3) GGGGGGGGGG GTCATAGCTG (2) TATCTTGGCA TGGAAGGCGG TGGCGTTCTC TGGTGACAAA TGGTGACTAA (2) TTTGCACCAA (2) 80.6 0.0806 E15 cortex CAAAAGGTCT (3) GGGGGGGGGG GTCATAGCTG (2) TAGAAGCTGA TATCTTGGCA TGGAAGGCGG TGGCCCTCTG (3) TGGCGTTCTC TGGGACAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TGGTGCCCAA TTTGAAACTG (3) 133.1 0.1331 P1 cortex ACTCTCTTCA (3) CTACAAGAAA TATCTTGGCA TGGCCCTCTG (3) TGGGACAAAA TGGTGACAAA TGGTGACTAA (2) TGGTGCCCAA TGGTGGCAAA TTGAAGCTGA TTTGAAACTG (3) 90.5 0.0905 Hypothalamus AACATTAGGA ACTCTCTTCA (3) CTACAAGAAA GCACAGATGA (2) GGGGGCCCTG GGGGGGGGGG TAGAAGCTGA TATCTTGGCA TCTCTCGTAG TCTGCACAAA (2) TGGCAAAAAA (3) TGGCCCTCTG (3) TGGCGACAAA TGGCGTTCTC TGGGCCGTTT TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TGGTGCAAAA TGGTGCCAAA TGGTGCCCAA TGGTGGCAAA TGGTGGCCAA TTATCATCAA TTGAAACTGG TTGAAGCTGA TTTGAATTAT TTTGATTTAT 294.9 0.2949 E12.5 retina AACATTAGGA AAGTGTGAAG (3) CAAAAGGTCT (3) GCTTGTGCCC (2) GGCAGGTTAT (3) GTCAAACTTA TATCTTGGCA TCTTGTGCCC TGGCCCTCTG (3) TGGCGTTCTC TGGGACAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TGGTGCAAAA TTGAAACTGG TTGGTGACAA TTTGATTTAT TTTTCACCAA 422.6 0.4226 E14.5 retina AAGTGTGAAG (3) ACTCTCTTCA (3) ATTCTCAGGT CAAAAGGTCT (3) CACAAGATGA CTACAAGAAA GCTTGTGCCC (2) GGCAGGTTAT (3) GTCAAACTTA TATCTTGGCA TCTCTCGTAG TCTTGTGCCC TGCAAACAGA (2) TGGCGTTCTC TGGTAAAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACAAG TGGTGACTAA (2) TGGTGCAAAA TGGTGGCAAA TGGTGGCCAA TTGAAGCTGA TTTGAAACTG (3) TTTGATTTAT TTTTCACCAA 476.9 0.4769 E16.5 retina ACTCTCTTCA (3) ATTCTCAGGT CACAAGATGA GCACAGATGA (2) GGCAGGTTAT (3) GTCAAACTTA TATCTTGGCA TCTGCACAAA (2) TGAAAGAGCT (3) TGGCAAAAAA (3) TGGCGACAAA TGGGCCGTTT TGGTGAAAAA (2) TGGTGACAAA TGGTGACGAA TGGTGACTAA (2) TGGTGGCCAA TTGAAACTGG TTGAAGCTGA TTTACACCAA TTTGAAACTG (3) TTTGATTTAT TTTTCACCAA 367.1 0.3671 E18.5 retina AAAACTTGCT AAGTGTGAAG (3) ACTCTCTTCA (3) GTCAAACTTA TAGAAGCTGA TATCTTGGCA TGAAAGAGCT (3) TGATAAAAAA TGGCAAAAAA (3) TGGCCCTCTG (3) TGGCGACAAA TGGCGTTCTC TGGTGAAAAA (2) TGGTGACAAA TGGTGACAAG TGGTGACTAA (2) TGGTGCCAAA TGGTGCCCAA TGGTGGCCAA TTATCATCAA TTTGAAACTG (3) TTTGATTTAT TTTTCACCAA 596.4 0.5964 P0.5 retina AAGTGTGAAG (3) GCACAGATGA (2) GGCAGGTTAT (3) GTCAAACTTA GTCATAGCTG (2) TATCTTGGCA TCTGCACAAA (2) TGGAAGGCGG TGGCAAAAAA (3) TGGCCCTCTG (3) TGGCGACAAA TGGCGTTCTC TGGGCCGTTT TGGTAAAAAA TGGTGACAAA TGGTGACTAA (2) TGGTGCCAAA TGGTGGCAAA TGGTGGCCAA TTGAAGCTGA TTTACACCAA TTTGAAACTG (3) TTTTCACCAA 235.9 0.2359 P2.5 retina AAGTGTGAAG (3) CAAAAGGTCT (3) GGCAGGTTAT (3) GGGGGGGGGG GTCAAACTTA GTCATAGCTG (2) TATCTTGGCA TCTTGTGCCC TGGCAAAAAA (3) TGGCCCTCTG (3) TGGCGTTCTC TGGTGACAAA TGGTGACAAG TGGTGACTAA (2) TGGTGGCAAA TTATCATCAA TTGAAACTGG TTGAAGCTGA TTTACACCAA TTTGAAACTG (3) TTTGAATTAT 292.4 0.2924 P4.5 retina AAGTGTGAAG (3) ACTCTCTTCA (3) GGGGGGGGGG GTCAAACTTA GTCATAGCTG (2) TATCTTGGCA TGATAAAAAA TGGCAAAAAA (3) TGGCCCTCTG (3) TGGCGTTCTC TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TGGTGGCAAA TGGTGGCCAA TTGAAACTGG 305.3 0.3053 P6.5 retina AAAACTTGCT AAGTGTGAAG (3) ACTCTCTTCA (3) CAAAAGGTCT (3) GCACAGATGA (2) GGCAGGTTAT (3) GGGGGGGGGG GTCATAGCTG (2) TATCTTGGCA TGAAAGAGCT (3) TGCAAACAGA (2) TGGCCCTCTG (3) TGGCGACAAA TGGCGTTCTC TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TTATCATCAA TTTACACCAA TTTGAAACTG (3) TTTGAATTAT TTTGCACCAA (2) 273.5 0.2735 P10.5 crx- retina AACATTAGGA AAGTGTGAAG (3) ACTCTCTTCA (3) CACAAGATGA CTTGCACCAA GCTTGTGCCC (2) GGCAGGTTAT (3) GGGGGCCCTG GTCAAACTTA TATCTTGGCA TCTGCACAAA (2) TGAAAGAGCT (3) TGCAAACAGA (2) TGGCCCTCTG (3) TGGCGTTCTC TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TGGTGGCCAA TTGAAACTGG TTGAAGCTGA TTTACACCAA TTTGAAACTG (3) TTTGAATTAT TTTGATTTAT TTTGCACCAA (2) 156.5 0.1565 P10.5 crx+ retina AAGTGTGAAG (3) ACTCTCTTCA (3) CTACAAGAAA GCTTGTGCCC (2) GGCAGGTTAT (3) GGGGGGGGGG GTCAAACTTA TATCTTGGCA TGATAAAAAA TGGCCCTCTG (3) TGGTAAAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACTAA (2) TTGAAACTGG TTTGAAACTG (3) TTTGATTTAT 243.9 0.2439 Adult retinal AAGTGTGAAG (3) ACTCTCTTCA (3) GGGGGCCCTG GGGGGGGGGG GTCATAGCTG (2) TAGAAGCTGA TATCTTGGCA TCTGCACAAA (2) TGAAAGAGCT (3) TGGAAGGCGG TGGCCCTCTG (3) TGGCGTTCTC TGGTAAAAAA TGGTGAAAAA (2) TGGTGACAAA TGGTGACAAG TGGTGACTAA (2) TGGTGCAAAA TTGAAACTGG TTGGTGACAA TTTGAAACTG (3) TTTGAATTAT 139.5 0.1395 ONL AAAACTTGCT AAGTGTGAAG (3) ACTCTCTTCA (3) GCACAGATGA (2) GGGGGCCGGT GGGGGGGGGG GTCATAGCTG (2) TATCTTGGCA TGGCAAAAAA (3) TGGCCCTCTG (3) TGGTGAAAAA (2) TGGTGACAAA TTGAAACTGG TTGGTGACAA TTTGAATTAT 101.2 0.1012