Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.28015
4930442L01Rik
RIKEN cDNA 4930442L01 gene
3
67583
Mm.28015
Pdzk1
PDZ domain containing 1
3
59020
Mm.28015
AW552393
expressed sequence AW552393
3
99922
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 100 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
GCCTCACATC
(
3
)
3.3
0.0033
P8 Cb GC
AGGATACCCC
(
4
)
1.6
0.0016
P8 Cb GC
CTTTCTCATT
(
7
)
1.6
0.0016
P8 Cb GC
GTCCCCTCCC (
6
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
GCCTCACATC
(
3
)
9.2
0.0092
Cb medulloblastoma
CTTTCTCATT
(
7
)
2.3
0.0023
Cb medulloblastoma
TATGTATTCT (
5
)
2.3
0.0023
Cb medulloblastoma
TGCTGGGCTG
(
7
)
2.3
0.0023
Cb medulloblastoma
TTCCTCCTTT (
6
)
2.3
0.0023
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
TGCTGGGCTG
(
7
)
8
0.008
P8 GC+1d culture
GCCTCACATC
(
3
)
3.4
0.0034
P8 GC+1d culture
TATGTATTCT (
5
)
3.4
0.0034
P8 GC+1d culture
AGGATACCCC
(
4
)
2.3
0.0023
P8 GC+1d culture
CTTTCTCATT
(
7
)
1.1
0.0011
P8 GC+1d culture
GGCTCAGCCA (
5
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
TGCTGGGCTG
(
7
)
7
0.007
P8 GC+SHH+1d culture
GCCTCACATC
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
AGGATACCCC
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
CAAATACACA (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TATGTATTCT (
5
)
1.2
0.0012
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
AGGATACCCC
(
4
)
7
0.007
3T3 fibroblasts
GTCCCCTCCC (
6
)
3.5
0.0035
3T3 fibroblasts
TGCTGGGCTG
(
7
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
TGCTGGGCTG
(
7
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
TATGTATTCT (
5
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
GCCTCACATC
(
3
)
12.7
0.0127
Hypothalamus
ACAGAAAGTG (
9
)
3.6
0.0036
Hypothalamus
TGCTGGGCTG
(
7
)
3.6
0.0036
Hypothalamus
CAAATACACA (
5
)
1.8
0.0018
Hypothalamus
TATGTATTCT (
5
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
AGGATACCCC
(
4
)
5.6
0.0056
E12.5 retina
TGCTGGGCTG
(
7
)
5.6
0.0056
E12.5 retina
GCCTCACATC
(
3
)
3.8
0.0038
E12.5 retina
CAAATACACA (
5
)
1.9
0.0019
E12.5 retina
GGCTCAGCCA (
5
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
AGGATACCCC
(
4
)
1.8
0.0018
E14.5 retina
TATGTATTCT (
5
)
1.8
0.0018
E14.5 retina
TTCCTCCTTT (
6
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
TGCTGGGCTG
(
7
)
1.8
0.0018
E16.5 retina
TTCCTCCTTT (
6
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
TATGTATTCT (
5
)
5.5
0.0055
E18.5 retina
AGGATACCCC
(
4
)
3.6
0.0036
E18.5 retina
TGCTGGGCTG
(
7
)
3.6
0.0036
E18.5 retina
GCCTCACATC
(
3
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
GCCTCACATC
(
3
)
5.9
0.0059
P0.5 retina
AGGATACCCC
(
4
)
3.9
0.0039
P0.5 retina
TTCCTCCTTT (
6
)
3.9
0.0039
P0.5 retina
GGGGTAGACT
(
3
)
2
0.002
P0.5 retina
TGCTGGGCTG
(
7
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
GGCTCAGCCA (
5
)
1.8
0.0018
P2.5 retina
GGGGTAGACT
(
3
)
1.8
0.0018
P2.5 retina
TGCTGGGCTG
(
7
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
AGGATACCCC
(
4
)
4
0.004
P4.5 retina
ACAGAAAGTG (
9
)
2
0.002
P4.5 retina
CAAATACACA (
5
)
2
0.002
P4.5 retina
GGGGTAGACT
(
3
)
2
0.002
P4.5 retina
TATGTATTCT (
5
)
2
0.002
P4.5 retina
TGCTGGGCTG
(
7
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
GCCTCACATC
(
3
)
3.3
0.0033
P6.5 retina
GGGGTAGACT
(
3
)
1.7
0.0017
P6.5 retina
TATGTATTCT (
5
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
AGGATACCCC
(
4
)
3.7
0.0037
P10.5 crx- retina
TGCTGGGCTG
(
7
)
3.7
0.0037
P10.5 crx- retina
ACAGAAAGTG (
9
)
1.9
0.0019
P10.5 crx- retina
GCCTCACATC
(
3
)
1.9
0.0019
P10.5 crx- retina
TATGTATTCT (
5
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
AGGATACCCC
(
4
)
3.8
0.0038
P10.5 crx+ retina
GGCTCAGCCA (
5
)
1.9
0.0019
P10.5 crx+ retina
TATGTATTCT (
5
)
1.9
0.0019
P10.5 crx+ retina
TTCCTCCTTT (
6
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
GCCTCACATC
(
3
)
3.7
0.0037
Adult retinal
GGGGTAGACT
(
3
)
3.7
0.0037
Adult retinal
TATGTATTCT (
5
)
3.7
0.0037
Adult retinal
AGGATACCCC
(
4
)
1.9
0.0019
Adult retinal
TGCTGGGCTG
(
7
)
1.9
0.0019
Adult retinal
TTCCTCCTTT (
6
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
GCCTCACATC
(
3
)
7.7
0.0077
ONL
CAAATACACA (
5
)
3.8
0.0038
ONL
GGGGTAGACT
(
3
)
3.8
0.0038
ONL
TGCTGGGCTG
(
7
)
1.9
0.0019
