Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.28017
5830420C07Rik
RIKEN cDNA 5830420C07 gene
11
77599
Mm.28017
Fbxw11
F-box and WD-40 domain protein 11
11
103583
Mm.28017
C530030P08Rik
RIKEN cDNA C530030P08 gene
11
97730
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 43 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
ACGGCTTTGT
(
3
)
9.8
0.0098
P8 Cb GC
GTCGGCCGCC (
25
)
3.3
0.0033
Cb medulloblastoma
ACGGCTTTGT
(
3
)
32.4
0.0324
Cb medulloblastoma
ATAATATCTG
(
3
)
2.3
0.0023
Cb medulloblastoma
TGAGAATGAT (
4
)
2.3
0.0023
P8 GC+1d culture
ACGGCTTTGT
(
3
)
12.6
0.0126
P8 GC+1d culture
GTCGGCCGCC (
25
)
1.1
0.0011
P8 GC+SHH+1d culture
ACGGCTTTGT
(
3
)
14.1
0.0141
P8 GC+SHH+1d culture
GTCGGCCGCC (
25
)
4.7
0.0047
P8 GC+SHH+1d culture
TGAGAATGAT (
4
)
1.2
0.0012
3T3 fibroblasts
ACGGCTTTGT
(
3
)
3.5
0.0035
3T3 fibroblasts
GTCGGCCGCC (
25
)
3.5
0.0035
Hypothalamus
ACGGCTTTGT
(
3
)
10.9
0.0109
Hypothalamus
ATAATATCTG
(
3
)
3.6
0.0036
Hypothalamus
GTCGGCCGCC (
25
)
1.8
0.0018
E12.5 retina
ACGGCTTTGT
(
3
)
7.5
0.0075
E12.5 retina
GTCGGCCGCC (
25
)
1.9
0.0019
E14.5 retina
ACGGCTTTGT
(
3
)
3.6
0.0036
E14.5 retina
GTCGGCCGCC (
25
)
3.6
0.0036
E14.5 retina
ATAATATCTG
(
3
)
1.8
0.0018
E16.5 retina
ACGGCTTTGT
(
3
)
18.1
0.0181
E16.5 retina
CAAAAGCAAC
(
3
)
1.8
0.0018
E16.5 retina
TGAGAATGAT (
4
)
1.8
0.0018
E18.5 retina
ACGGCTTTGT
(
3
)
9.1
0.0091
P0.5 retina
ACGGCTTTGT
(
3
)
7.9
0.0079
P0.5 retina
GTCGGCCGCC (
25
)
5.9
0.0059
P2.5 retina
ACGGCTTTGT
(
3
)
12.3
0.0123
P2.5 retina
CAAAAGCAAC
(
3
)
3.5
0.0035
P2.5 retina
GTCGGCCGCC (
25
)
3.5
0.0035
P2.5 retina
TGAGAATGAT (
4
)
1.8
0.0018
P4.5 retina
ACGGCTTTGT
(
3
)
5.9
0.0059
P4.5 retina
GTCGGCCGCC (
25
)
2
0.002
P6.5 retina
ACGGCTTTGT
(
3
)
10
0.01
P10.5 crx- retina
ACGGCTTTGT
(
3
)
9.3
0.0093
P10.5 crx- retina
GTCGGCCGCC (
25
)
3.7
0.0037
P10.5 crx+ retina
ACGGCTTTGT
(
3
)
19.2
0.0192
P10.5 crx+ retina
GTCGGCCGCC (
25
)
3.8
0.0038
P10.5 crx+ retina
CAAAAGCAAC
(
3
)
1.9
0.0019
Adult retinal
ACGGCTTTGT
(
3
)
9.3
0.0093
Adult retinal
ATAATATCTG
(
3
)
1.9
0.0019
Adult retinal
GTCGGCCGCC (
25
)
1.9
0.0019
ONL
ACGGCTTTGT
(
3
)
7.7
0.0077
ONL
TGAGAATGAT (
4
)
1.9
0.0019
