Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28222	Ddx39	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	8		68278
Gene Ontology	ATP binding | ATP dependent helicase activity | ATP dependent RNA helicase activity | ATPase activity | helicase activity | hydrolase activity | nucleic acid binding | nucleus | RNA binding
Human Homolog	DDX39[DEAD (Asp-Glu-Ala-Asp) box polypeptide 39]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAGAGGACT (2) GCCACTCTCT GCCATTTTCT (4) 22.9 0.0229 Cb medulloblastoma CACTTCAAAC (3) GCCACTCTCT GCCATTTTCT (4) GCCCTGGCCC (2) GGGGCCACTT (2) 23 0.023 P8 GC+1d culture CCAGAGGACT (2) GCCACTCTCT GCCCTGGCCC (2) 20.5 0.0205 P8 GC+SHH+1d culture CCAGAGGACT (2) GCCACTCTCT GCCCTGGCCC (2) 29.3 0.0293 3T3 fibroblasts CCAGAGGACT (2) GCCACTCTCT GCCCTGGCCC (2) GGGGCCACTT (2) 28 0.028 E15 cortex CACTTCAAAC (3) CCAGAGGACT (2) GCCCTGGCCC (2) GGGGCCACTT (2) 49.4 0.0494 P1 cortex CCAGAGGACT (2) GCCCTGGCCC (2) GGGGCCACTT (2) 36.3 0.0363 Hypothalamus CCAGAGGACT (2) GCCACTCTCT GCCATTTTCT (4) GGGGCCACTT (2) 16.2 0.0162 E12.5 retina CCAGAGGACT (2) GCCACTCTCT 28.2 0.0282 E14.5 retina CCAGAGGACT (2) GCCACTCTCT 18.2 0.0182 E16.5 retina CCAGAGGACT (2) GCCACTCTCT 48.9 0.0489 E18.5 retina CACTTCAAAC (3) CCAGAGGACT (2) GCCACTCTCT GGGGCCACTT (2) 18.2 0.0182 P0.5 retina CCAGAGGACT (2) GCCACTCTCT GGGGCCACTT (2) 78.5 0.0785 P2.5 retina CCAGAGGACT (2) GCCACTCTCT GGGGCCACTT (2) 15.9 0.0159 P4.5 retina CCAGAGGACT (2) GCCACTCTCT GGGGCCACTT (2) 27.8 0.0278 P6.5 retina CACTTCAAAC (3) CCAGAGGACT (2) GCCACTCTCT GCCATTTTCT (4) 23.4 0.0234 P10.5 crx- retina CACTTCAAAC (3) CCAGAGGACT (2) GCCACTCTCT GCCATTTTCT (4) GGGGCCACTT (2) 39 0.039 P10.5 crx+ retina CACTTCAAAC (3) GCCACTCTCT GCCATTTTCT (4) GGGGCCACTT (2) 11.4 0.0114 Adult retinal CACTTCAAAC (3) CCAGAGGACT (2) GCCACTCTCT GCCATTTTCT (4) GGGGCCACTT (2) 39 0.039 ONL CCAGAGGACT (2) GGGGCCACTT (2) 7.6 0.0076