Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.282242	Scarb1	scavenger receptor class B, member 1	5	5 68.0 cM	20778
Gene Ontology	cell adhesion | integral to membrane | membrane | receptor activity
Human Homolog	SCARB1[scavenger receptor class B, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 74 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTGAAGCAA 4.9 0.0049 P8 Cb GC TGCAAAAAAA (21) 4.9 0.0049 P8 Cb GC GCAGACAGGG (5) 1.6 0.0016 P8 Cb GC GCGCCCTCCC (5) 1.6 0.0016 Cb medulloblastoma TGCAAAAAAA (21) 13.9 0.0139 Cb medulloblastoma GCAGACAGGG (5) 2.3 0.0023 P8 GC+1d culture TGCAAAAAAA (21) 9.1 0.0091 P8 GC+1d culture GCAGACAGGG (5) 5.7 0.0057 P8 GC+1d culture GGCAAAGCTA (5) 2.3 0.0023 P8 GC+1d culture ACTGGATTAC (3) 1.1 0.0011 P8 GC+1d culture GCGCCCTCCC (5) 1.1 0.0011 P8 GC+1d culture TCCTGAGCCC 1.1 0.0011 P8 GC+SHH+1d culture TGCAAAAAAA (21) 15.2 0.0152 P8 GC+SHH+1d culture ACTGAAGCAA 9.4 0.0094 P8 GC+SHH+1d culture TCCTGAGCCC 3.5 0.0035 P8 GC+SHH+1d culture ACTGGATTAC (3) 2.3 0.0023 P8 GC+SHH+1d culture ACTTCCTTTC (3) 1.2 0.0012 P8 GC+SHH+1d culture GCGCCCTCCC (5) 1.2 0.0012 E15 cortex GCGCCCTCCC (5) 9.9 0.0099 E15 cortex ACTGAAGCAA 4.9 0.0049 E15 cortex GCAGACAGGG (5) 4.9 0.0049 E15 cortex GGGAAAGGGG (17) 4.9 0.0049 E15 cortex TCCTGAGCCC 4.9 0.0049 Hypothalamus TGCAAAAAAA (21) 9.1 0.0091 Hypothalamus ACTGAAGCAA 3.6 0.0036 Hypothalamus ACTGGATTAC (3) 1.8 0.0018 Hypothalamus GCAGACAGGG (5) 1.8 0.0018 Hypothalamus GCGCCCTCCC (5) 1.8 0.0018 E12.5 retina GCGCCCTCCC (5) 3.8 0.0038 E12.5 retina GGGAAAGGGG (17) 3.8 0.0038 E12.5 retina ACTGGATTAC (3) 1.9 0.0019 E12.5 retina TCCTGAGCCC 1.9 0.0019 E12.5 retina TGCAAAAAAA (21) 1.9 0.0019 E14.5 retina ACTGAAGCAA 10.9 0.0109 E14.5 retina GCGCCCTCCC (5) 7.3 0.0073 E14.5 retina ACTGGATTAC (3) 3.6 0.0036 E14.5 retina ACTTCCTTTC (3) 1.8 0.0018 E14.5 retina TGCAAAAAAA (21) 1.8 0.0018 E16.5 retina ACTGAAGCAA 14.5 0.0145 E16.5 retina GCGCCCTCCC (5) 9.1 0.0091 E16.5 retina ACTGGATTAC (3) 7.2 0.0072 E16.5 retina TGCAAAAAAA (21) 5.4 0.0054 E16.5 retina GGCAAAGCTA (5) 1.8 0.0018 E16.5 retina GGGAAAGGGG (17) 1.8 0.0018 E18.5 retina ACTGAAGCAA 34.6 0.0346 E18.5 retina TGCAAAAAAA (21) 20 0.02 E18.5 retina TCCTGAGCCC 3.6 0.0036 E18.5 retina ACTGGATTAC (3) 1.8 0.0018 E18.5 retina GCGCCCTCCC (5) 1.8 0.0018 P0.5 retina TGCAAAAAAA (21) 7.9 0.0079 P0.5 retina ACTGAAGCAA 2 0.002 P0.5 retina ACTTCCTTTC (3) 2 0.002 P2.5 retina ACTGAAGCAA 10.6 0.0106 P2.5 retina ACTGGATTAC (3) 3.5 0.0035 P2.5 retina TGCAAAAAAA (21) 3.5 0.0035 P2.5 retina TCCTGAGCCC 1.8 0.0018 P4.5 retina ACTGAAGCAA 13.9 0.0139 P4.5 retina ACTGGATTAC (3) 4 0.004 P4.5 retina TGCAAAAAAA (21) 4 0.004 P6.5 retina ACTGAAGCAA 10 0.01 P6.5 retina TGCAAAAAAA (21) 5 0.005 P6.5 retina ACTGGATTAC (3) 1.7 0.0017 P10.5 crx- retina ACTGAAGCAA 13 0.013 P10.5 crx+ retina ACTGAAGCAA 19.2 0.0192 P10.5 crx+ retina TGCAAAAAAA (21) 9.6 0.0096 P10.5 crx+ retina ACTGGATTAC (3) 1.9 0.0019 Adult retinal ACTGAAGCAA 14.8 0.0148 Adult retinal TGCAAAAAAA (21) 5.6 0.0056 Adult retinal GCAGACAGGG (5) 3.7 0.0037 Adult retinal TCCTGAGCCC 3.7 0.0037 Adult retinal GCGCCCTCCC (5) 1.9 0.0019 Adult retinal GGCAAAGCTA (5) 1.9 0.0019 ONL ACTGAAGCAA 13.4 0.0134 ONL TGCAAAAAAA (21) 7.7 0.0077