Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28240	Snx6	sorting nexin 6	12		72183
Gene Ontology	intracellular protein transport | protein transport | protein transporter activity | transport
Human Homolog	SNX6[sorting nexin 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 59 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGCAAAAC (40) 11.4 0.0114 P8 Cb GC CTCCTTGTAT 9.8 0.0098 P8 Cb GC AGGTGTTCCT 3.3 0.0033 P8 Cb GC GTGGCAACTA (2) 1.6 0.0016 Cb medulloblastoma CTCCTTGTAT 9.2 0.0092 Cb medulloblastoma CAGGCAAAAC (40) 4.6 0.0046 Cb medulloblastoma AGGTGTTCCT 2.3 0.0023 P8 GC+1d culture CTCCTTGTAT 6.8 0.0068 P8 GC+1d culture CAGGCAAAAC (40) 5.7 0.0057 P8 GC+1d culture GTTAAGTCAG (2) 1.1 0.0011 P8 GC+SHH+1d culture CAGGCAAAAC (40) 11.7 0.0117 P8 GC+SHH+1d culture CTCCTTGTAT 4.7 0.0047 P8 GC+SHH+1d culture AAAGAACTAA 1.2 0.0012 3T3 fibroblasts CAGGCAAAAC (40) 10.5 0.0105 3T3 fibroblasts CTCCTTGTAT 3.5 0.0035 3T3 fibroblasts GTTAAGTCAG (2) 3.5 0.0035 E15 cortex AGGTGTTCCT 9.9 0.0099 E15 cortex CAGGCAAAAC (40) 4.9 0.0049 P1 cortex CAGGCAAAAC (40) 9.1 0.0091 P1 cortex AGGTGTTCCT 4.5 0.0045 P1 cortex CTCCTTGTAT 4.5 0.0045 Hypothalamus CAGGCAAAAC (40) 5.4 0.0054 Hypothalamus CTCCTTGTAT 3.6 0.0036 Hypothalamus AAAGAACTAA 1.8 0.0018 Hypothalamus AGGTGTTCCT 1.8 0.0018 Hypothalamus GTGGCAACTA (2) 1.8 0.0018 E12.5 retina CAGGCAAAAC (40) 20.7 0.0207 E12.5 retina CTCCTTGTAT 11.3 0.0113 E12.5 retina GTTAAGTCAG (2) 5.6 0.0056 E12.5 retina AAAGAACTAA 1.9 0.0019 E12.5 retina GTGGCAACTA (2) 1.9 0.0019 E14.5 retina CAGGCAAAAC (40) 12.8 0.0128 E14.5 retina CTCCTTGTAT 5.5 0.0055 E16.5 retina CAGGCAAAAC (40) 9.1 0.0091 E16.5 retina CTCCTTGTAT 9.1 0.0091 E16.5 retina GTGGCAACTA (2) 3.6 0.0036 E16.5 retina GTTAAGTCAG (2) 1.8 0.0018 E18.5 retina CAGGCAAAAC (40) 12.7 0.0127 E18.5 retina GTGGCAACTA (2) 1.8 0.0018 P0.5 retina CAGGCAAAAC (40) 13.7 0.0137 P0.5 retina CTCCTTGTAT 7.9 0.0079 P2.5 retina CAGGCAAAAC (40) 24.6 0.0246 P2.5 retina CTCCTTGTAT 5.3 0.0053 P4.5 retina CAGGCAAAAC (40) 13.9 0.0139 P4.5 retina CTCCTTGTAT 9.9 0.0099 P4.5 retina AAAGAACTAA 2 0.002 P4.5 retina GTGGCAACTA (2) 2 0.002 P6.5 retina CAGGCAAAAC (40) 16.7 0.0167 P6.5 retina CTCCTTGTAT 5 0.005 P6.5 retina GTGGCAACTA (2) 5 0.005 P10.5 crx- retina CAGGCAAAAC (40) 11.1 0.0111 P10.5 crx- retina GTGGCAACTA (2) 1.9 0.0019 P10.5 crx+ retina CAGGCAAAAC (40) 13.5 0.0135 P10.5 crx+ retina CTCCTTGTAT 7.7 0.0077 P10.5 crx+ retina AGGTGTTCCT 1.9 0.0019 Adult retinal CAGGCAAAAC (40) 11.1 0.0111 Adult retinal AAAGAACTAA 1.9 0.0019 Adult retinal CTCCTTGTAT 1.9 0.0019 ONL CAGGCAAAAC (40) 34.5 0.0345