Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.282556	Npc2	Niemann Pick type C2	12		67963
Gene Ontology	extracellular space
Human Homolog	NPC2[Niemann-Pick disease, type C2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 124 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC GCTGTTTGCT (3) 3.3 0.0033 P8 Cb GC TAAGATTGAG 3.3 0.0033 P8 Cb GC CCTTTTACCC (3) 1.6 0.0016 P8 Cb GC GACACCAACT (3) 1.6 0.0016 P8 Cb GC GACGGAGTGG 1.6 0.0016 P8 Cb GC GCTTGTTTGC (2) 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma CTGTTTTATG (5) 4.6 0.0046 Cb medulloblastoma GACACCAACT (3) 2.3 0.0023 Cb medulloblastoma GCTGTTGCTG (3) 2.3 0.0023 Cb medulloblastoma GCTGTTTGCT (3) 2.3 0.0023 Cb medulloblastoma TAAGATTGAG 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture GCTGTTTGCT (3) 16 0.016 P8 GC+1d culture TAAGATTGAG 9.1 0.0091 P8 GC+1d culture CCTTTTACCC (3) 8 0.008 P8 GC+1d culture CTGGTTGCTG (6) 2.3 0.0023 P8 GC+1d culture GACACCAACT (3) 2.3 0.0023 P8 GC+1d culture CAGAGAGAGG (6) 1.1 0.0011 P8 GC+1d culture GACACCAATC (2) 1.1 0.0011 P8 GC+1d culture GCATCCTGGA (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture GCTGTTTGCT (3) 15.2 0.0152 P8 GC+SHH+1d culture TAAGATTGAG 12.9 0.0129 P8 GC+SHH+1d culture CCTTTTACCC (3) 7 0.007 P8 GC+SHH+1d culture CAGAGAGAGG (6) 2.3 0.0023 P8 GC+SHH+1d culture CTGGTTGCTG (6) 1.2 0.0012 P8 GC+SHH+1d culture CTGTTTTATG (5) 1.2 0.0012 P8 GC+SHH+1d culture GCATCCTGGA (4) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GCTGTTTGCT (3) 38.6 0.0386 3T3 fibroblasts CCTTTTACCC (3) 3.5 0.0035 3T3 fibroblasts CTGGTTGCTG (6) 3.5 0.0035 3T3 fibroblasts GACACCAATC (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex TAAGATTGAG 9.9 0.0099 E15 cortex GACGGAGTGG 4.9 0.0049 E15 cortex GCTGTTTGCT (3) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus CTGGTTGCTG (6) 7.2 0.0072 Hypothalamus GCTGTTTGCT (3) 5.4 0.0054 Hypothalamus CCTTTTACCC (3) 3.6 0.0036 Hypothalamus CTGTTTTATG (5) 3.6 0.0036 Hypothalamus TAAGATTGAG 3.6 0.0036 Hypothalamus CAGAGAGAGG (6) 1.8 0.0018 Hypothalamus TTTGTTTGCT (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina TAAGATTGAG 5.6 0.0056 E12.5 retina CCTTTTACCC (3) 3.8 0.0038 E12.5 retina CTGTTTTATG (5) 1.9 0.0019 E12.5 retina GCATCCTGGA (4) 1.9 0.0019 E12.5 retina GCTTGTTTGC (2) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina TAAGATTGAG 5.5 0.0055 E14.5 retina CTGGTTGCTG (6) 1.8 0.0018 E14.5 retina GACACCAATC (2) 1.8 0.0018 E14.5 retina GACGGAGTGG 1.8 0.0018 E14.5 retina GCTGTTTGCT (3) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina GCTGTTTGCT (3) 5.4 0.0054 E16.5 retina TAAGATTGAG 3.6 0.0036 E16.5 retina CTGGTTGCTG (6) 1.8 0.0018 E16.5 retina GACACCAATC (2) 1.8 0.0018 E16.5 retina GCTTGTTTGC (2) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina TAAGATTGAG 10.9 0.0109 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina GCTGTTTGCT (3) 5.9 0.0059 P0.5 retina TAAGATTGAG 5.9 0.0059 P0.5 retina GCATCCTGGA (4) 3.9 0.0039 P0.5 retina CCTTTTACCC (3) 2 0.002 P0.5 retina CTGGTTGCTG (6) 2 0.002 P0.5 retina CTGTTTTATG (5) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina TAAGATTGAG 7 0.007 P2.5 retina CAGAGAGAGG (6) 1.8 0.0018 P2.5 retina GACACCAATC (2) 1.8 0.0018 P2.5 retina TTTGTTTGCT (4) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina TAAGATTGAG 5.9 0.0059 P4.5 retina CTGTTTTATG (5) 4 0.004 P4.5 retina GACACCAATC (2) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina GCTGTTGCTG (3) 1.7 0.0017 P6.5 retina TAAGATTGAG 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina CTGGTTGCTG (6) 7.4 0.0074 P10.5 crx- retina GCTGTTGCTG (3) 1.9 0.0019 P10.5 crx- retina TAAGATTGAG 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina CTGGTTGCTG (6) 3.8 0.0038 P10.5 crx+ retina CAGAGAGAGG (6) 1.9 0.0019 P10.5 crx+ retina CTGTTTTATG (5) 1.9 0.0019 P10.5 crx+ retina GCTGTTTGCT (3) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal CCTTTTACCC (3) 5.6 0.0056 Adult retinal CTGTTTTATG (5) 3.7 0.0037 Adult retinal GCTGTTGCTG (3) 1.9 0.0019 Adult retinal TAAGATTGAG 1.9 0.0019 Adult retinal TTTGTTTGCT (4) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL GACACCAACT (3) 5.7 0.0057 ONL CCTTTTACCC (3) 1.9 0.0019