Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.282888
Vdrip
vitamin D receptor interacting protein
14
67381
Gene Ontology
receptor activity
Human Homolog
VDRIP[vitamin D receptor interacting protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 75 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
GTGCATACTT
(
2
)
16.3
0.0163
P8 Cb GC
GAGCATACTT
(
4
)
3.3
0.0033
P8 Cb GC
TGCCACCACT (
9
)
3.3
0.0033
P8 Cb GC
AAAATAAAAT (
8
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
TGCCACCACT (
9
)
4.6
0.0046
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
GAGCATACTT
(
4
)
2.3
0.0023
P8 GC+1d culture
TGCCACCACT (
9
)
2.3
0.0023
P8 GC+1d culture
GTGCATACTT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
GAGCATACTT
(
4
)
4.7
0.0047
P8 GC+SHH+1d culture
TGCCACCACT (
9
)
4.7
0.0047
P8 GC+SHH+1d culture
AAAATAAAAT (
8
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGCATACTT
(
2
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
TGCCACCACT (
9
)
14
0.014
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
AGATGGCCAT
(
4
)
4.9
0.0049
E15 cortex
GTGCATACTT
(
2
)
4.9
0.0049
E15 cortex
TGCCACCACT (
9
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
GAGCATACTT
(
4
)
4.5
0.0045
P1 cortex
GTGCATACTT
(
2
)
4.5
0.0045
P1 cortex
TGCCACCACT (
9
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TGCCACCACT (
9
)
7.2
0.0072
Hypothalamus
GTGCATACTT
(
2
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
CTGTCTGTGC (
8
)
3.8
0.0038
E12.5 retina
TGCCACCACT (
9
)
3.8
0.0038
E12.5 retina
AGATGGCCAT
(
4
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TGCCACCACT (
9
)
9.1
0.0091
E14.5 retina
GGCTCCTTAG (
4
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TGCCACCACT (
9
)
5.4
0.0054
E16.5 retina
AGATGGCCAT
(
4
)
1.8
0.0018
E16.5 retina
CTGTCTGTGC (
8
)
1.8
0.0018
E16.5 retina
GAGCATACTT
(
4
)
1.8
0.0018
E16.5 retina
GGCTCCTTAG (
4
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
AGATGGCCAT
(
4
)
1.8
0.0018
E18.5 retina
TGCCACCACT (
9
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
TGCCACCACT (
9
)
5.9
0.0059
P0.5 retina
GAGCATACTT
(
4
)
2
0.002
P0.5 retina
GTGCATACTT
(
2
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TGCCACCACT (
9
)
3.5
0.0035
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TGCCACCACT (
9
)
5.9
0.0059
P4.5 retina
GGCTCCTTAG (
4
)
2
0.002
P4.5 retina
GTGCATACTT
(
2
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
GTGCATACTT
(
2
)
5
0.005
P6.5 retina
GAGCATACTT
(
4
)
1.7
0.0017
P6.5 retina
TGCCACCACT (
9
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GTGCATACTT
(
2
)
7.4
0.0074
P10.5 crx- retina
GAGCATACTT
(
4
)
3.7
0.0037
P10.5 crx- retina
AGATGGCCAT
(
4
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
GTGCATACTT
(
2
)
9.6
0.0096
P10.5 crx+ retina
AGATGGCCAT
(
4
)
1.9
0.0019
P10.5 crx+ retina
GAGCATACTT
(
4
)
1.9
0.0019
P10.5 crx+ retina
TGCCACCACT (
9
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GAGCATACTT
(
4
)
3.7
0.0037
Adult retinal
TGCCACCACT (
9
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
AAAATAAAAT (
8
)
3.8
0.0038
ONL
TGCCACCACT (
9
)
3.8
0.0038
ONL
GAGCATACTT
(
4
)
1.9
0.0019
