Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28420	Vars2	valyl-tRNA synthetase 2	17	17 19.02 cM	22321
Gene Ontology	mitochondrion | tRNA ligase activity
Human Homolog	VARS2[valyl-tRNA synthetase 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 47 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAATTTTCCT (7) 1.6 0.0016 P8 Cb GC GCCAGGACAG (3) 1.6 0.0016 P8 Cb GC GGTGGGGAAA (4) 1.6 0.0016 P8 Cb GC TCCATCCTCT (7) 1.6 0.0016 Cb medulloblastoma GCCAGGACAG (3) 2.3 0.0023 Cb medulloblastoma TCCATCCTCT (7) 2.3 0.0023 P8 GC+1d culture GCCAGGACAG (3) 2.3 0.0023 P8 GC+1d culture TCCATCCTCT (7) 1.1 0.0011 P8 GC+SHH+1d culture CCCTTTGTCA (3) 4.7 0.0047 P8 GC+SHH+1d culture TCCATCCTCT (7) 3.5 0.0035 P8 GC+SHH+1d culture GAATTTTCCT (7) 1.2 0.0012 P8 GC+SHH+1d culture GCCAGGACAG (3) 1.2 0.0012 3T3 fibroblasts GCCAGGACAG (3) 7 0.007 3T3 fibroblasts CCCTTTGTCA (3) 3.5 0.0035 E15 cortex CCCTTTGTCA (3) 14.8 0.0148 E15 cortex GAGTTTGGCA 4.9 0.0049 E15 cortex TCCATCCTCT (7) 4.9 0.0049 P1 cortex CCCTTTGTCA (3) 4.5 0.0045 P1 cortex GGTGGGGAAA (4) 4.5 0.0045 Hypothalamus GCCAGGACAG (3) 1.8 0.0018 E12.5 retina CCCTTTGTCA (3) 1.9 0.0019 E12.5 retina GAATTTTCCT (7) 1.9 0.0019 E14.5 retina GAGTTTGGCA 3.6 0.0036 E14.5 retina AAGGGCGAGA 1.8 0.0018 E14.5 retina GGTGGGGAAA (4) 1.8 0.0018 E16.5 retina CCCTTTGTCA (3) 3.6 0.0036 E16.5 retina GAATTTTCCT (7) 1.8 0.0018 E18.5 retina CCCTTTGTCA (3) 1.8 0.0018 P0.5 retina CCCTTTGTCA (3) 7.9 0.0079 P0.5 retina AAGGGCGAGA 2 0.002 P0.5 retina GAGTTTGGCA 2 0.002 P2.5 retina GAATTTTCCT (7) 3.5 0.0035 P2.5 retina AAGGGCGAGA 1.8 0.0018 P2.5 retina CCCTTTGTCA (3) 1.8 0.0018 P2.5 retina GCCAGGACAG (3) 1.8 0.0018 P4.5 retina GAGTTTGGCA 4 0.004 P4.5 retina CCCTTTGTCA (3) 2 0.002 P4.5 retina TCCATCCTCT (7) 2 0.002 P6.5 retina GCCAGGACAG (3) 3.3 0.0033 P6.5 retina CCCTTTGTCA (3) 1.7 0.0017 P6.5 retina TCCATCCTCT (7) 1.7 0.0017 P10.5 crx- retina GGTGGGGAAA (4) 1.9 0.0019 P10.5 crx+ retina GAATTTTCCT (7) 1.9 0.0019 Adult retinal GAGTTTGGCA 1.9 0.0019 Adult retinal GCCAGGACAG (3) 1.9 0.0019 ONL CCCTTTGTCA (3) 1.9 0.0019 ONL GAGTTTGGCA 1.9 0.0019