Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.285993	Calm1	calmodulin 1	12	7 4.5 cM	12313
Gene Ontology	calcium ion binding | cell cycle | cytoplasm | G-protein coupled receptor protein signaling pathway | plasma membrane | protein binding
Human Homolog	CALM1[calmodulin 1 (phosphorylase kinase, delta)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 160 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAAACTTAG (3) 48.9 0.0489 P8 Cb GC ACTCGGAGCC 21.2 0.0212 P8 Cb GC CGGCCACTGG (3) 13.1 0.0131 P8 Cb GC CAGCTTGATG 11.4 0.0114 P8 Cb GC CGGTCACTGG 8.2 0.0082 P8 Cb GC ACAGACTTAG 1.6 0.0016 P8 Cb GC ACGTGGCGCA 1.6 0.0016 P8 Cb GC AGAAACTGGC 1.6 0.0016 Cb medulloblastoma ACAAACTTAG (3) 60.1 0.0601 Cb medulloblastoma ACTCGGAGCC 43.9 0.0439 Cb medulloblastoma CAGCTTGATG 18.5 0.0185 Cb medulloblastoma CGGTCACTGG 6.9 0.0069 Cb medulloblastoma ACGTGGCGCA 4.6 0.0046 Cb medulloblastoma TCCAACTTGT 4.6 0.0046 Cb medulloblastoma ACAAACTTAA 2.3 0.0023 Cb medulloblastoma ATTTAGTGTG 2.3 0.0023 Cb medulloblastoma CACTTATAAA 2.3 0.0023 Cb medulloblastoma CGGCCACTGG (3) 2.3 0.0023 Cb medulloblastoma GGACTGGGGC (6) 2.3 0.0023 Cb medulloblastoma GTGACAGTGA (3) 2.3 0.0023 Cb medulloblastoma GTGCGAGCGA 2.3 0.0023 P8 GC+1d culture ACTCGGAGCC 89 0.089 P8 GC+1d culture ACAAACTTAG (3) 34.2 0.0342 P8 GC+1d culture CGGCCACTGG (3) 16 0.016 P8 GC+1d culture TCCAACTTGT 4.6 0.0046 P8 GC+1d culture GGACTGGGGC (6) 2.3 0.0023 P8 GC+1d culture GTTCACTAGG 2.3 0.0023 P8 GC+1d culture ACAAACTTAA 1.1 0.0011 P8 GC+1d culture CGGTCACTGG 1.1 0.0011 P8 GC+1d culture TATTGGTCGG 1.1 0.0011 P8 GC+SHH+1d culture ACTCGGAGCC 55 0.055 P8 GC+SHH+1d culture ACAAACTTAG (3) 30.4 0.0304 P8 GC+SHH+1d culture CGGCCACTGG (3) 12.9 0.0129 P8 GC+SHH+1d culture TCCAACTTGT 3.5 0.0035 P8 GC+SHH+1d culture CAGCTTGATG 2.3 0.0023 P8 GC+SHH+1d culture CACTTATAAA 1.2 0.0012 P8 GC+SHH+1d culture GGACTGGGGC (6) 1.2 0.0012 P8 GC+SHH+1d culture GTGACAGTGA (3) 1.2 0.0012 P8 GC+SHH+1d culture TATTGGTCGG 1.2 0.0012 3T3 fibroblasts CGGCCACTGG (3) 38.6 0.0386 3T3 fibroblasts ACAAACTTAG (3) 24.5 0.0245 3T3 fibroblasts ACTCGGAGCC 21 0.021 3T3 fibroblasts GTGACAGTGA (3) 7 0.007 3T3 fibroblasts AGAAACTGGC 3.5 0.0035 3T3 fibroblasts CAGCTTGATG 3.5 0.0035 E15 cortex ACTCGGAGCC 84.1 0.0841 E15 cortex ACAAACTTAG (3) 29.7 0.0297 E15 cortex CGGCCACTGG (3) 4.9 0.0049 P1 cortex ACAAACTTAG (3) 31.8 0.0318 P1 cortex ACTCGGAGCC 27.3 0.0273 P1 cortex ACGTGGCGCA 4.5 0.0045 P1 cortex CGGCCACTGG (3) 4.5 0.0045 Hypothalamus ACTCGGAGCC 50.7 0.0507 Hypothalamus ACAAACTTAG (3) 36.2 0.0362 Hypothalamus CAGCTTGATG 14.5 0.0145 Hypothalamus CGGCCACTGG (3) 12.7 0.0127 Hypothalamus GTGACAGTGA (3) 10.9 0.0109 Hypothalamus TCCAACTTGT 10.9 0.0109 Hypothalamus ACGTGGCGCA 9.1 0.0091 Hypothalamus ATTTAGTGTG 3.6 0.0036 Hypothalamus CGGTCACTGG 3.6 0.0036 Hypothalamus GTGCGAGCGA 3.6 0.0036 Hypothalamus TATTGGTCGG 3.6 0.0036 Hypothalamus CACTTATAAA 1.8 0.0018 Hypothalamus GTTCACTAGG 1.8 0.0018 E12.5 retina ACAAACTTAG (3) 31.9 0.0319 E12.5 retina ACTCGGAGCC 28.2 0.0282 E12.5 retina CGGCCACTGG (3) 15 0.015 E12.5 retina CGGTCACTGG 3.8 0.0038 E12.5 retina GTTCACTAGG 1.9 0.0019 E12.5 retina TCCAACTTGT 1.9 0.0019 E14.5 retina ACTCGGAGCC 34.6 0.0346 E14.5 retina ACAAACTTAG (3) 29.2 0.0292 E14.5 retina ACGTGGCGCA 9.1 0.0091 E14.5 retina CGGCCACTGG (3) 7.3 0.0073 E14.5 retina TATTGGTCGG 7.3 0.0073 E14.5 retina GTGACAGTGA (3) 3.6 0.0036 E14.5 retina CAGCTTGATG 1.8 0.0018 E14.5 retina GTGCGAGCGA 1.8 0.0018 E14.5 retina GTTCACTAGG 1.8 0.0018 E16.5 retina ACTCGGAGCC 50.7 0.0507 E16.5 retina ACAAACTTAG (3) 30.8 0.0308 E16.5 retina ACGTGGCGCA 14.5 0.0145 E16.5 retina CAGCTTGATG 9.1 0.0091 E16.5 retina CGGCCACTGG (3) 9.1 0.0091 E16.5 retina CGGTCACTGG 3.6 0.0036 E16.5 retina GTGACAGTGA (3) 3.6 0.0036 E16.5 retina GTGCGAGCGA 3.6 0.0036 E16.5 retina TATTGGTCGG 3.6 0.0036 E16.5 retina AGAAACTGGC 1.8 0.0018 E16.5 retina GGACTGGGGC (6) 1.8 0.0018 E18.5 retina ACTCGGAGCC 25.5 0.0255 E18.5 retina ACAAACTTAG (3) 9.1 0.0091 E18.5 retina CAGCTTGATG 5.5 0.0055 E18.5 retina CGGCCACTGG (3) 5.5 0.0055 E18.5 retina GGACTGGGGC (6) 3.6 0.0036 E18.5 retina TCCAACTTGT 3.6 0.0036 E18.5 retina ACGTGGCGCA 1.8 0.0018 E18.5 retina CGGTCACTGG 1.8 0.0018 E18.5 retina TATTGGTCGG 1.8 0.0018 P0.5 retina ACAAACTTAG (3) 19.6 0.0196 P0.5 retina ACTCGGAGCC 13.7 0.0137 P0.5 retina CGGCCACTGG (3) 7.9 0.0079 P0.5 retina CAGCTTGATG 3.9 0.0039 P0.5 retina GGACTGGGGC (6) 2 0.002 P2.5 retina ACTCGGAGCC 21.1 0.0211 P2.5 retina ACAAACTTAG (3) 12.3 0.0123 P2.5 retina CAGCTTGATG 12.3 0.0123 P2.5 retina CGGCCACTGG (3) 8.8 0.0088 P2.5 retina GTGCGAGCGA 5.3 0.0053 P2.5 retina ACGTGGCGCA 1.8 0.0018 P2.5 retina GTGACAGTGA (3) 1.8 0.0018 P4.5 retina ACAAACTTAG (3) 19.8 0.0198 P4.5 retina ACTCGGAGCC 15.9 0.0159 P4.5 retina CAGCTTGATG 9.9 0.0099 P4.5 retina ACGTGGCGCA 4 0.004 P4.5 retina CGGCCACTGG (3) 4 0.004 P4.5 retina GGACTGGGGC (6) 2 0.002 P6.5 retina ACTCGGAGCC 33.3 0.0333 P6.5 retina ACAAACTTAG (3) 6.7 0.0067 P6.5 retina CAGCTTGATG 5 0.005 P6.5 retina ACGTGGCGCA 3.3 0.0033 P6.5 retina CACTTATAAA 3.3 0.0033 P6.5 retina CGGCCACTGG (3) 3.3 0.0033 P6.5 retina ACAAACTTAA 1.7 0.0017 P6.5 retina CGGTCACTGG 1.7 0.0017 P6.5 retina GTTCACTAGG 1.7 0.0017 P10.5 crx- retina ACAAACTTAG (3) 133.8 0.1338 P10.5 crx- retina ACTCGGAGCC 105.9 0.1059 P10.5 crx- retina CAGCTTGATG 9.3 0.0093 P10.5 crx- retina CGGCCACTGG (3) 9.3 0.0093 P10.5 crx- retina TCCAACTTGT 7.4 0.0074 P10.5 crx- retina CGGTCACTGG 5.6 0.0056 P10.5 crx- retina TATTGGTCGG 5.6 0.0056 P10.5 crx- retina GGACTGGGGC (6) 3.7 0.0037 P10.5 crx- retina ACAGACTTAG 1.9 0.0019 P10.5 crx- retina ACGTGGCGCA 1.9 0.0019 P10.5 crx- retina CACTTATAAA 1.9 0.0019 P10.5 crx- retina GTTCACTAGG 1.9 0.0019 P10.5 crx+ retina ACAAACTTAG (3) 76.9 0.0769 P10.5 crx+ retina ACTCGGAGCC 61.5 0.0615 P10.5 crx+ retina CGGCCACTGG (3) 15.4 0.0154 P10.5 crx+ retina CAGCTTGATG 7.7 0.0077 P10.5 crx+ retina ACGTGGCGCA 3.8 0.0038 P10.5 crx+ retina CGGTCACTGG 3.8 0.0038 P10.5 crx+ retina TCCAACTTGT 3.8 0.0038 P10.5 crx+ retina ACAGACTTAG 1.9 0.0019 P10.5 crx+ retina CACTTATAAA 1.9 0.0019 P10.5 crx+ retina GTGCGAGCGA 1.9 0.0019 Adult retinal ACAAACTTAG (3) 37 0.037 Adult retinal ACTCGGAGCC 35.2 0.0352 Adult retinal TCCAACTTGT 9.3 0.0093 Adult retinal CGGCCACTGG (3) 5.6 0.0056 Adult retinal ACGTGGCGCA 1.9 0.0019 Adult retinal CAGCTTGATG 1.9 0.0019 ONL ACTCGGAGCC 11.5 0.0115 ONL ACAAACTTAG (3) 9.6 0.0096 ONL CAGCTTGATG 3.8 0.0038 ONL CACTTATAAA 1.9 0.0019 ONL CGGCCACTGG (3) 1.9 0.0019