Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.286407	Sox9	SRY-box containing gene 9	11	11 69.5 cM	20682
Gene Ontology	cartilage condensation | cell differentiation | cell fate specification | DNA binding | heart development | male germ-line sex determination | male gonad development | nucleus | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	SOX9[SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 58 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAACATATT GAGGACGATT TTTTTTTTTT (2) 11.4 0.0114 Cb medulloblastoma GAGGACGATT TTTTTTTTTT (2) 11.5 0.0115 P8 GC+1d culture CCTCTGCAAG GAGGACGATT TCTTTAAAAA TTAACTCTGA (2) TTTTTTTTTT (2) 21.6 0.0216 P8 GC+SHH+1d culture CCTCTGCAAG GAGGACGATT TCTTTAAAAA TGCTAAAATT TTAACTCTGA (2) TTTTTTTTTT (2) 17.5 0.0175 3T3 fibroblasts CCTCTGCAAG GAGGACGATT 14 0.014 E15 cortex GAGGACGATT TTTTTTTTTT (2) 9.8 0.0098 P1 cortex GAGGACGATT TTTTTTTTTT (2) 9 0.009 Hypothalamus TTTTTTTTTT (2) 7.2 0.0072 E12.5 retina ACAACATATT CCTCTGCAAG TCTTTAAAAA TGCTAAAATT TTTTTTTTTT (2) 15.1 0.0151 E14.5 retina GAGGACGATT TCTTTAAAAA TTAACTCTGA (2) TTTTTTTTTT (2) 29.1 0.0291 E16.5 retina ACAACATATT TCTTTAAAAA TTTTTTTTTT (2) 9 0.009 E18.5 retina ACAACATATT TACACCCCCA (2) TTTTTTTTTT (2) 14.5 0.0145 P0.5 retina TTTTTTTTTT (2) 9.8 0.0098 P2.5 retina GAGGACGATT TACACCCCCA (2) TCTTTAAAAA TGCTAAAATT TTAACTCTGA (2) TTTTTTTTTT (2) 26.4 0.0264 P4.5 retina ACAACATATT GAGGACGATT TCTTTAAAAA TTAACTCTGA (2) TTTTTTTTTT (2) 21.8 0.0218 P6.5 retina TTTTTTTTTT (2) 8.3 0.0083 P10.5 crx- retina TACACCCCCA (2) TTAACTCTGA (2) 20.5 0.0205 P10.5 crx+ retina TTAACTCTGA (2) TTTTTTTTTT (2) 5.7 0.0057 Adult retinal TTTTTTTTTT (2) 7.4 0.0074 ONL TCTTTAAAAA TTTTTTTTTT (2) 5.7 0.0057