Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.286593	Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	9	9 6.0 cM	20586
Gene Ontology	ATP binding | ATP dependent helicase activity | ATPase activity | DNA binding | helicase activity | nucleic acid binding | nucleosome assembly | nucleus | organogenesis | protein binding | SWI/SNF complex
Human Homolog	SMARCA4[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAATCTTCCA CCAACACTGA (4) CGCGTGCCGG 26.2 0.0262 Cb medulloblastoma CGCGTGCCGG 6.9 0.0069 P8 GC+1d culture CAATCTTCCA CGCGTGCCGG GACTCACTCA (2) 37.6 0.0376 P8 GC+SHH+1d culture CGCGTGCCGG TGTACAGTTC 36.3 0.0363 3T3 fibroblasts CCAACACTGA (4) CGCGTGCCGG 38.5 0.0385 E15 cortex CCAACACTGA (4) CGCGTGCCGG 128.6 0.1286 P1 cortex CCAACACTGA (4) CGCGTGCCGG 36.3 0.0363 Hypothalamus CCAACACTGA (4) CGCGTGCCGG GCCTTGGACC (2) 14.4 0.0144 E12.5 retina CGCGTGCCGG GACTCACTCA (2) 15 0.015 E14.5 retina CATCCACTGA CCAACACTGA (4) CGCGTGCCGG 29.1 0.0291 E16.5 retina AAAGTGCCAA CATCCACTGA CGCGTGCCGG GACTCACTCA (2) GCCTTGGACC (2) TGTACAGTTC 54.2 0.0542 E18.5 retina CGCGTGCCGG 10.9 0.0109 P0.5 retina CGCGTGCCGG GACTCACTCA (2) 37.3 0.0373 P2.5 retina CATCCACTGA CGCGTGCCGG GACTCACTCA (2) GCCTTGGACC (2) 30 0.03 P4.5 retina CCAACACTGA (4) CGCGTGCCGG GCCTTGGACC (2) 31.8 0.0318 P6.5 retina CCAACACTGA (4) CGCGTGCCGG GACTCACTCA (2) 21.7 0.0217 P10.5 crx- retina AAAGTGCCAA CCAACACTGA (4) CGCGTGCCGG 20.5 0.0205 P10.5 crx+ retina CCAACACTGA (4) CGCGTGCCGG 32.7 0.0327 Adult retinal CGCGTGCCGG GACTCACTCA (2) TGTACAGTTC 29.7 0.0297 ONL CGCGTGCCGG 1.9 0.0019