Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.286892	Col4a5	procollagen, type IV, alpha 5	X	X 62.4 cM	12830
Gene Ontology	basement membrane | basement membrane | cell adhesion | collagen | collagen type IV | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | membrane
Human Homolog	COL4A5[collagen, type IV, alpha 5 (Alport syndrome)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 26 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAGAAAATG 1.6 0.0016 Cb medulloblastoma GGCCAAGGAA 2.3 0.0023 P8 GC+1d culture AAGAGAAGAG (2) GGCCAAGGAA 4.5 0.0045 P8 GC+SHH+1d culture AAGAGAAGAG (2) TGAGAAAATG 2.4 0.0024 3T3 fibroblasts GGCCAAGGAA 3.5 0.0035 E15 cortex AAGAGAAGAG (2) 4.9 0.0049 P1 cortex AAGAGAAGAG (2) 9.1 0.0091 Hypothalamus GGCCAAGGAA TATATGTGGG 3.6 0.0036 E14.5 retina TATATGTGGG 1.8 0.0018 E16.5 retina GGCCAAGGAA 1.8 0.0018 E18.5 retina GGCTTTTTCT 3.6 0.0036 P0.5 retina AAGAGAAGAG (2) 3.9 0.0039 P2.5 retina AAGAGAAGAG (2) GGCCAAGGAA GGCTTTTTCT 5.4 0.0054 P4.5 retina GGCCAAGGAA 2 0.002 P6.5 retina AAGAGAAGAG (2) 1.7 0.0017 P10.5 crx- retina GGCCAAGGAA 1.9 0.0019 P10.5 crx+ retina GGCCAAGGAA TGAGAAAATG 3.8 0.0038 Adult retinal AAGAGAAGAG (2) 5.6 0.0056 ONL GGCCAAGGAA TATATGTGGG 5.7 0.0057