Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.287982	C1d	nuclear DNA binding protein	11		57316
Gene Ontology	DNA binding | ligand-dependent nuclear receptor interactor activity | negative regulation of transcription | protein binding | receptor activity | transcription corepressor activity | transcriptional repressor complex
Human Homolog	C1D[nuclear DNA-binding protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGCTTTATA CGTTTGTAGA (2) TTCCATTTAA TTTTCAAAAA (3) 13 0.013 Cb medulloblastoma ATGCTTTATA CGTTTGTAGA (2) TATAAATTTA TTTTCAAAAA (3) 25.4 0.0254 P8 GC+1d culture CGTTTGTAGA (2) TTCCATTTAA TTTTCAAAAA (3) 47.9 0.0479 P8 GC+SHH+1d culture TTCCATTTAA TTTCTGTGAT (2) TTTTCAAAAA (3) 28.1 0.0281 3T3 fibroblasts CGTTTGTAGA (2) TTTTCAAAAA (3) 7 0.007 Hypothalamus CGTTTGTAGA (2) TATAAATTTA TTCCATTTAA TTTCTGTGAT (2) TTTTCAAAAA (3) 27.1 0.0271 E12.5 retina CGTTTGTAGA (2) TATAAATTTA TTCCATTTAA TTTTCAAAAA (3) 11.4 0.0114 E14.5 retina CGTTTGTAGA (2) TATAAATTTA TTCCATTTAA TTTTCAAAAA (3) 21.8 0.0218 E16.5 retina ATGCTTTATA TTCCATTTAA TTTCTGTGAT (2) 14.5 0.0145 E18.5 retina ATGCTTTATA CGTTTGTAGA (2) TTCCATTTAA TTTTCAAAAA (3) 23.6 0.0236 P0.5 retina TTCCATTTAA 2 0.002 P2.5 retina CGTTTGTAGA (2) TATAAATTTA TTCCATTTAA TTGAACTAAC TTTCTGTGAT (2) TTTTCAAAAA (3) 17.8 0.0178 P4.5 retina TATAAATTTA TTCCATTTAA TTGAACTAAC 21.9 0.0219 P6.5 retina CGTTTGTAGA (2) TATAAATTTA TTCCATTTAA 13.4 0.0134 P10.5 crx- retina ATGCTTTATA CGTTTGTAGA (2) TATAAATTTA TTCCATTTAA TTTTCAAAAA (3) 18.7 0.0187 P10.5 crx+ retina ATGCTTTATA CGTTTGTAGA (2) TTCCATTTAA TTTCTGTGAT (2) 13.3 0.0133 Adult retinal CGTTTGTAGA (2) TATAAATTTA TTCCATTTAA TTTCTGTGAT (2) TTTTCAAAAA (3) 11.3 0.0113 ONL ATGCTTTATA CGTTTGTAGA (2) TTCCATTTAA TTTTCAAAAA (3) 9.5 0.0095