Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.288602
D730048M19Rik
RIKEN cDNA D730048M19 gene
6
77991
Mm.288602
Jarid1a
jumonji, AT rich interactive domain 1A (Rbp2 like)
6
6 54.0 cM
214899
Mm.288602
D230014I24Rik
RIKEN cDNA D230014I24 gene
6
319391
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 88 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTAGCTCACA (
30
)
16.3
0.0163
P8 Cb GC
ATGGATGAAA (
7
)
1.6
0.0016
P8 Cb GC
TCTTCTCTTA (
4
)
1.6
0.0016
P8 Cb GC
TGGCATACAG
(
4
)
1.6
0.0016
P8 Cb GC
TGTAGAAAAA (
5
)
1.6
0.0016
Cb medulloblastoma
GTAGCTCACA (
30
)
18.5
0.0185
Cb medulloblastoma
TGGCATACAG
(
4
)
4.6
0.0046
Cb medulloblastoma
AATATTTCAG (
3
)
2.3
0.0023
Cb medulloblastoma
ATGGATGAAA (
7
)
2.3
0.0023
Cb medulloblastoma
CTTTAGAAAA (
4
)
2.3
0.0023
Cb medulloblastoma
TGTAGAAAAA (
5
)
2.3
0.0023
Cb medulloblastoma
TTTGGCAAAA (
7
)
2.3
0.0023
P8 GC+1d culture
GTAGCTCACA (
30
)
27.4
0.0274
P8 GC+1d culture
TCTTCTCTTA (
4
)
3.4
0.0034
P8 GC+1d culture
AGGATACTGA
(
5
)
1.1
0.0011
P8 GC+1d culture
ATGGATGAAA (
7
)
1.1
0.0011
P8 GC+1d culture
CTTTAGAAAA (
4
)
1.1
0.0011
P8 GC+1d culture
TGGCATACAG
(
4
)
1.1
0.0011
P8 GC+1d culture
TGTAGAAAAA (
5
)
1.1
0.0011
P8 GC+1d culture
TTTGGCAAAA (
7
)
1.1
0.0011
P8 GC+SHH+1d culture
GTAGCTCACA (
30
)
15.2
0.0152
P8 GC+SHH+1d culture
TCTTCTCTTA (
4
)
3.5
0.0035
P8 GC+SHH+1d culture
TGGCATACAG
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
AATATTTCAG (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
AGGATACTGA
(
5
)
1.2
0.0012
P8 GC+SHH+1d culture
CATCACCGAG
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TGTAGAAAAA (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTGGCAAAA (
7
)
1.2
0.0012
3T3 fibroblasts
GTAGCTCACA (
30
)
14
0.014
3T3 fibroblasts
CATCACCGAG
(
3
)
3.5
0.0035
E15 cortex
GTAGCTCACA (
30
)
29.7
0.0297
E15 cortex
ATGGATGAAA (
7
)
4.9
0.0049
E15 cortex
GAGGATGATA
(
6
)
4.9
0.0049
P1 cortex
GTAGCTCACA (
30
)
13.6
0.0136
P1 cortex
TCTTCTCTTA (
4
)
13.6
0.0136
P1 cortex
TGTAGAAAAA (
5
)
4.5
0.0045
P1 cortex
TTTGGCAAAA (
7
)
4.5
0.0045
Hypothalamus
GTAGCTCACA (
30
)
29
0.029
Hypothalamus
AGGATACTGA
(
5
)
1.8
0.0018
E12.5 retina
GTAGCTCACA (
30
)
30
0.03
E12.5 retina
AGGATACTGA
(
5
)
1.9
0.0019
E12.5 retina
CATCACCGAG
(
3
)
1.9
0.0019
E12.5 retina
GAGGATGATA
(
6
)
1.9
0.0019
E12.5 retina
TCTTCTCTTA (
4
)
1.9
0.0019
E14.5 retina
GTAGCTCACA (
30
)
31
0.031
E14.5 retina
TGGCATACAG
(
4
)
1.8
0.0018
E14.5 retina
TGTAGAAAAA (
5
)
1.8
0.0018
E16.5 retina
GTAGCTCACA (
30
)
41.7
0.0417
E16.5 retina
AGGATACTGA
(
5
)
1.8
0.0018
E18.5 retina
GTAGCTCACA (
30
)
16.4
0.0164
E18.5 retina
AATATTTCAG (
3
)
1.8
0.0018
E18.5 retina
GAGGATGATA
(
6
)
1.8
0.0018
E18.5 retina
GGGGGAAGGG (
8
)
1.8
0.0018
P0.5 retina
GTAGCTCACA (
30
)
25.5
0.0255
P0.5 retina
TCTTCTCTTA (
4
)
11.8
0.0118
P0.5 retina
CATCACCGAG
(
3
)
2
0.002
P0.5 retina
GAGGATGATA
(
6
)
2
0.002
P2.5 retina
GTAGCTCACA (
30
)
22.9
0.0229
P2.5 retina
CATCACCGAG
(
3
)
3.5
0.0035
P2.5 retina
AGGATACTGA
(
5
)
1.8
0.0018
P4.5 retina
GTAGCTCACA (
30
)
25.8
0.0258
P4.5 retina
TCTTCTCTTA (
4
)
4
0.004
P4.5 retina
TGGCATACAG
(
4
)
2
0.002
P4.5 retina
TGTAGAAAAA (
5
)
2
0.002
P6.5 retina
GTAGCTCACA (
30
)
18.3
0.0183
P6.5 retina
CATCACCGAG
(
3
)
3.3
0.0033
P6.5 retina
TCTTCTCTTA (
4
)
1.7
0.0017
P6.5 retina
TGGCATACAG
(
4
)
1.7
0.0017
P10.5 crx- retina
GTAGCTCACA (
30
)
16.7
0.0167
P10.5 crx- retina
AATATTTCAG (
3
)
1.9
0.0019
P10.5 crx- retina
ATGGATGAAA (
7
)
1.9
0.0019
P10.5 crx- retina
CTTTAGAAAA (
4
)
1.9
0.0019
P10.5 crx- retina
GAGGATGATA
(
6
)
1.9
0.0019
P10.5 crx- retina
GGGGGAAGGG (
8
)
1.9
0.0019
P10.5 crx- retina
TCTTCTCTTA (
4
)
1.9
0.0019
P10.5 crx- retina
TGGCATACAG
(
4
)
1.9
0.0019
P10.5 crx+ retina
GTAGCTCACA (
30
)
28.8
0.0288
P10.5 crx+ retina
CTTTAGAAAA (
4
)
3.8
0.0038
P10.5 crx+ retina
GGGGGAAGGG (
8
)
3.8
0.0038
P10.5 crx+ retina
AGGATACTGA
(
5
)
1.9
0.0019
P10.5 crx+ retina
CATCACCGAG
(
3
)
1.9
0.0019
P10.5 crx+ retina
TGGCATACAG
(
4
)
1.9
0.0019
Adult retinal
GTAGCTCACA (
30
)
16.7
0.0167
Adult retinal
TCTTCTCTTA (
4
)
5.6
0.0056
Adult retinal
TGGCATACAG
(
4
)
5.6
0.0056
Adult retinal
GGGGGAAGGG (
8
)
1.9
0.0019
ONL
GTAGCTCACA (
30
)
24.9
0.0249
ONL
CTTTAGAAAA (
4
)
1.9
0.0019
