Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288606	Rrn3	RRN3 RNA polymerase I transcription factor homolog (yeast)	16		106298
Human Homolog	RRN3[RRN3 RNA polymerase I transcription factor homolog (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 131 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC CTAAAAAAAA (20) 11.4 0.0114 P8 Cb GC GCTGACTCTT (2) 8.2 0.0082 P8 Cb GC CGCCACCACT (9) 4.9 0.0049 P8 Cb GC CTTCCGTGAA 3.3 0.0033 P8 Cb GC GGTTTTTAAA (8) 3.3 0.0033 P8 Cb GC TAAGGATCCA (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma CTAAAAAAAA (20) 39.3 0.0393 Cb medulloblastoma GCTGACTCTT (2) 13.9 0.0139 Cb medulloblastoma CGCCACCACT (9) 4.6 0.0046 Cb medulloblastoma CTTCCGTGAA 4.6 0.0046 Cb medulloblastoma GGTTTTTAAA (8) 4.6 0.0046 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GCTGACTCTT (2) 38.8 0.0388 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture CTAAAAAAAA (20) 19.4 0.0194 P8 GC+1d culture GGTTTTTAAA (8) 4.6 0.0046 P8 GC+1d culture CTTCCGTGAA 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture CTAAAAAAAA (20) 41 0.041 P8 GC+SHH+1d culture GCTGACTCTT (2) 22.2 0.0222 P8 GC+SHH+1d culture CGCCACCACT (9) 7 0.007 P8 GC+SHH+1d culture CTTCCGTGAA 4.7 0.0047 P8 GC+SHH+1d culture CTGCTCCTGC (16) 1.2 0.0012 P8 GC+SHH+1d culture CTGTATCAGC (5) 1.2 0.0012 P8 GC+SHH+1d culture GGTTTTTAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture TAAGGATCCA (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CGCCACCACT (9) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex CGCCACCACT (9) 14.8 0.0148 E15 cortex CTAAAAAAAA (20) 14.8 0.0148 E15 cortex CTGCTCCTGC (16) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex GCTGACTCTT (2) 9.1 0.0091 P1 cortex TAAGGATCCA (3) 9.1 0.0091 P1 cortex CTAAAAAAAA (20) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus CTAAAAAAAA (20) 16.3 0.0163 Hypothalamus GCTGACTCTT (2) 9.1 0.0091 Hypothalamus CGCCACCACT (9) 5.4 0.0054 Hypothalamus CTGTATCAGC (5) 1.8 0.0018 Hypothalamus CTTCCGTGAA 1.8 0.0018 Hypothalamus GGTTTTTAAA (8) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina CTAAAAAAAA (20) 11.3 0.0113 E12.5 retina GCTGACTCTT (2) 7.5 0.0075 E12.5 retina CGCCACCACT (9) 3.8 0.0038 E12.5 retina CTTCCGTGAA 3.8 0.0038 E12.5 retina TAAGGATCCA (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GCTGACTCTT (2) 14.6 0.0146 E14.5 retina CTAAAAAAAA (20) 12.8 0.0128 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina CTTCCGTGAA 3.6 0.0036 E14.5 retina CGCCACCACT (9) 1.8 0.0018 E14.5 retina CTGCTCCTGC (16) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GCTGACTCTT (2) 19.9 0.0199 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina CTAAAAAAAA (20) 5.4 0.0054 E16.5 retina CGCCACCACT (9) 3.6 0.0036 E16.5 retina GGTTTTTAAA (8) 3.6 0.0036 E16.5 retina CTTCCGTGAA 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CTAAAAAAAA (20) 20 0.02 E18.5 retina CGCCACCACT (9) 3.6 0.0036 E18.5 retina CTTCCGTGAA 3.6 0.0036 E18.5 retina GCTGACTCTT (2) 3.6 0.0036 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GCTGACTCTT (2) 7.9 0.0079 P0.5 retina CTAAAAAAAA (20) 5.9 0.0059 P0.5 retina TAAGGATCCA (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CTAAAAAAAA (20) 15.8 0.0158 P2.5 retina GCTGACTCTT (2) 5.3 0.0053 P2.5 retina GGTTTTTAAA (8) 3.5 0.0035 P2.5 retina CGCCACCACT (9) 1.8 0.0018 P2.5 retina CTGTATCAGC (5) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina CTAAAAAAAA (20) 29.7 0.0297 P4.5 retina GCTGACTCTT (2) 7.9 0.0079 P4.5 retina CGCCACCACT (9) 5.9 0.0059 P4.5 retina CTTCCGTGAA 4 0.004 P4.5 retina GGTTTTTAAA (8) 4 0.004 P4.5 retina TAAGGATCCA (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina CTAAAAAAAA (20) 13.3 0.0133 P6.5 retina CTTCCGTGAA 5 0.005 P6.5 retina CGCCACCACT (9) 3.3 0.0033 P6.5 retina GCTGACTCTT (2) 3.3 0.0033 P6.5 retina GGTTTTTAAA (8) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina CTAAAAAAAA (20) 5.6 0.0056 P10.5 crx- retina CGCCACCACT (9) 3.7 0.0037 P10.5 crx- retina GCTGACTCTT (2) 3.7 0.0037 P10.5 crx- retina GGTTTTTAAA (8) 3.7 0.0037 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina GCTGACTCTT (2) 21.1 0.0211 P10.5 crx+ retina CTAAAAAAAA (20) 7.7 0.0077 P10.5 crx+ retina CTTCCGTGAA 3.8 0.0038 P10.5 crx+ retina CGCCACCACT (9) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal GCTGACTCTT (2) 14.8 0.0148 Adult retinal CGCCACCACT (9) 7.4 0.0074 Adult retinal CTAAAAAAAA (20) 5.6 0.0056 Adult retinal CTTCCGTGAA 5.6 0.0056 Adult retinal GGTTTTTAAA (8) 1.9 0.0019 Adult retinal TAAGGATCCA (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL CGCCACCACT (9) 5.7 0.0057 ONL GCTGACTCTT (2) 5.7 0.0057 ONL CTAAAAAAAA (20) 1.9 0.0019 ONL CTTCCGTGAA 1.9 0.0019