Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288642	Prrx1	paired related homeobox 1	1	1 H2.1 (1 85.4 cM)	18933
Gene Ontology	development | DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	PRRX1[paired related homeobox 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 25 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAGCCTGTG (2) GCCAACAGCA (2) 3.2 0.0032 Cb medulloblastoma CCAGCCTGTG (2) 2.3 0.0023 P8 GC+1d culture CCAGCCTGTG (2) 5.7 0.0057 P8 GC+SHH+1d culture ATGGTACTGA (2) CCAGCCTGTG (2) 5.9 0.0059 3T3 fibroblasts CCAGCCTGTG (2) GCCAACAGCA (2) 31.5 0.0315 E15 cortex CCAGCCTGTG (2) 9.9 0.0099 P1 cortex CCAGCCTGTG (2) 4.5 0.0045 Hypothalamus ATGGTACTGA (2) CCAGCCTGTG (2) 7.2 0.0072 E12.5 retina CCAGCCTGTG (2) GCCAACAGCA (2) 5.7 0.0057 E16.5 retina CCAGCCTGTG (2) 7.2 0.0072 P0.5 retina CCAGCCTGTG (2) 15.7 0.0157 P2.5 retina CCAGCCTGTG (2) 8.8 0.0088 P4.5 retina CCAGCCTGTG (2) 11.9 0.0119 P6.5 retina CCAGCCTGTG (2) GCCAACAGCA (2) 10 0.01 P10.5 crx- retina CCAGCCTGTG (2) 16.7 0.0167 P10.5 crx+ retina CCAGCCTGTG (2) GCCAACAGCA (2) 3.8 0.0038 Adult retinal CCAGCCTGTG (2) 9.3 0.0093 ONL CCAGCCTGTG (2) 3.8 0.0038