Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288785	2900024N03Rik	RIKEN cDNA 2900024N03 gene	2		72863
Mm.288785	9430019J22Rik	RIKEN cDNA 9430019J22 gene	2		77277
Mm.288785	Mnab	membrane associated DNA binding protein	2		319817
Gene Ontology	nucleic acid binding
Human Homolog	MNAB[membrane associated DNA binding protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 87 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC GTGGCGCACG (61) 13.1 0.0131 P8 Cb GC CACAAAATAA (10) 6.5 0.0065 P8 Cb GC ATGCTCTATT (5) 3.3 0.0033 P8 Cb GC CCCAAAATAA (8) 1.6 0.0016 P8 Cb GC GATTTTTCTT (3) 1.6 0.0016 P8 Cb GC TGGCTTTTAT (8) 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma CACAAAATAA (10) 6.9 0.0069 Cb medulloblastoma GTGGCGCACG (61) 6.9 0.0069 Cb medulloblastoma CAACAAAAGT (4) 2.3 0.0023 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture CACAAAATAA (10) 8 0.008 P8 GC+1d culture GTGGCGCACG (61) 6.8 0.0068 P8 GC+1d culture ATGCTCTATT (5) 2.3 0.0023 P8 GC+1d culture TGGCTTTTAT (8) 1.1 0.0011 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture CACAAAATAA (10) 5.9 0.0059 P8 GC+SHH+1d culture TGGCTTTTAT (8) 4.7 0.0047 P8 GC+SHH+1d culture GATTTTTCTT (3) 2.3 0.0023 P8 GC+SHH+1d culture GTGGCGCACG (61) 2.3 0.0023 P8 GC+SHH+1d culture ATGCTCTATT (5) 1.2 0.0012 P8 GC+SHH+1d culture CCCAAAATAA (8) 1.2 0.0012 3T3 fibroblasts GTGGCGCACG (61) 63.1 0.0631 3T3 fibroblasts ATGCTCTATT (5) 3.5 0.0035 E15 cortex GTGGCGCACG (61) 113.8 0.1138 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex GAAGCATTTA (3) 4.9 0.0049 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex GTGGCGCACG (61) 18.2 0.0182 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus GTGGCGCACG (61) 3.6 0.0036 Hypothalamus CACAAAATAA (10) 1.8 0.0018 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina GTGGCGCACG (61) 11.3 0.0113 E12.5 retina CACAAAATAA (10) 1.9 0.0019 E14.5 retina GTGGCGCACG (61) 29.2 0.0292 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina CACAAAATAA (10) 3.6 0.0036 E16.5 retina GTGGCGCACG (61) 25.4 0.0254 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina ATGCTCTATT (5) 1.8 0.0018 E16.5 retina GATTTTTCTT (3) 1.8 0.0018 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina GTGGCGCACG (61) 10.9 0.0109 E18.5 retina ATGCTCTATT (5) 1.8 0.0018 E18.5 retina CAACAAAAGT (4) 1.8 0.0018 E18.5 retina CACAAAATAA (10) 1.8 0.0018 E18.5 retina TGGCTTTTAT (8) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina GTGGCGCACG (61) 25.5 0.0255 P0.5 retina ATGCTCTATT (5) 3.9 0.0039 P0.5 retina GATTTTTCTT (3) 2 0.002 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina GTGGCGCACG (61) 17.6 0.0176 P2.5 retina ATGCTCTATT (5) 3.5 0.0035 P2.5 retina CACAAAATAA (10) 3.5 0.0035 P2.5 retina CCCAAAATAA (8) 1.8 0.0018 P2.5 retina GAAGCATTTA (3) 1.8 0.0018 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina GTGGCGCACG (61) 17.8 0.0178 P4.5 retina CAACAAAAGT (4) 4 0.004 P4.5 retina CACAAAATAA (10) 4 0.004 P4.5 retina ATGCTCTATT (5) 2 0.002 P4.5 retina GATTTTTCTT (3) 2 0.002 P6.5 retina GTGGCGCACG (61) 38.3 0.0383 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina CACAAAATAA (10) 8.3 0.0083 P6.5 retina CCTTTCTGGT (7) 1.7 0.0017 P6.5 retina GAAGCATTTA (3) 1.7 0.0017 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina GTGGCGCACG (61) 13 0.013 P10.5 crx- retina CACAAAATAA (10) 5.6 0.0056 P10.5 crx- retina ATGGGTGTCC (6) 3.7 0.0037 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina GTGGCGCACG (61) 32.7 0.0327 P10.5 crx+ retina CACAAAATAA (10) 7.7 0.0077 P10.5 crx+ retina ATGCTCTATT (5) 1.9 0.0019 P10.5 crx+ retina ATGGGTGTCC (6) 1.9 0.0019 Adult retinal GTGGCGCACG (61) 22.2 0.0222 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal CACAAAATAA (10) 1.9 0.0019 ONL GTGGCGCACG (61) 23 0.023 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL CACAAAATAA (10) 5.7 0.0057 ONL CCTTTCTGGT (7) 3.8 0.0038 ONL GATTTTTCTT (3) 1.9 0.0019