Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288962	AI481320	expressed sequence AI481320	11		103756
Mm.288962	Nup88	nucleoporin 88	11	11 42.0 cM	19069
Gene Ontology	nucleus | protein transport | transport
Human Homolog	NUP88[nucleoporin 88kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGGTGCTGG (64) 8.2 0.0082 P8 Cb GC TCACCTTCTG (4) 6.5 0.0065 P8 Cb GC GGAGGCACTC (4) 4.9 0.0049 P8 Cb GC TGCTGCCACT (6) 4.9 0.0049 P8 Cb GC CCCTTAAGAA (7) 3.3 0.0033 P8 Cb GC AAGAAAGAGT (2) 1.6 0.0016 P8 Cb GC AAGCTGGGTG (8) 1.6 0.0016 P8 Cb GC ATTTCGGATG (3) 1.6 0.0016 P8 Cb GC TGGGTGTTAG (2) 1.6 0.0016 Cb medulloblastoma TGCTGCCACT (6) 9.2 0.0092 Cb medulloblastoma TGGGTGCTGG (64) 9.2 0.0092 Cb medulloblastoma CCCTTAAGAA (7) 6.9 0.0069 Cb medulloblastoma TCACCTTCTG (4) 4.6 0.0046 Cb medulloblastoma TGGAGATGCT (4) 2.3 0.0023 Cb medulloblastoma TGGGTGTTAG (2) 2.3 0.0023 P8 GC+1d culture TCACCTTCTG (4) 11.4 0.0114 P8 GC+1d culture TGCTGCCACT (6) 6.8 0.0068 P8 GC+1d culture TGGGTGCTGG (64) 5.7 0.0057 P8 GC+1d culture CCCTTAAGAA (7) 2.3 0.0023 P8 GC+1d culture GGAGGCACTC (4) 2.3 0.0023 P8 GC+1d culture TGGGTGTTAG (2) 2.3 0.0023 P8 GC+1d culture TGGAGATGCT (4) 1.1 0.0011 P8 GC+SHH+1d culture TCACCTTCTG (4) 7 0.007 P8 GC+SHH+1d culture TGCTGCCACT (6) 7 0.007 P8 GC+SHH+1d culture TGGGTGCTGG (64) 3.5 0.0035 P8 GC+SHH+1d culture TGGAGATGCT (4) 2.3 0.0023 P8 GC+SHH+1d culture AAGCTGGGTG (8) 1.2 0.0012 P8 GC+SHH+1d culture CCCTTAAGAA (7) 1.2 0.0012 P8 GC+SHH+1d culture TGGGTGTTAG (2) 1.2 0.0012 3T3 fibroblasts TGGGTGCTGG (64) 17.5 0.0175 3T3 fibroblasts TGCTGCCACT (6) 7 0.007 3T3 fibroblasts AAGCTGGCGT (2) 3.5 0.0035 E15 cortex TGGGTGCTGG (64) 14.8 0.0148 E15 cortex AAGCTGGCGT (2) 4.9 0.0049 E15 cortex GGAGGCACTC (4) 4.9 0.0049 E15 cortex TGCTGCCACT (6) 4.9 0.0049 E15 cortex TGGAGATGCT (4) 4.9 0.0049 P1 cortex TGGGTGCTGG (64) 13.6 0.0136 P1 cortex CCCTTAAGAA (7) 4.5 0.0045 P1 cortex TCACCTTCTG (4) 4.5 0.0045 P1 cortex TGCTGCCACT (6) 4.5 0.0045 Hypothalamus TGGGTGCTGG (64) 9.1 0.0091 Hypothalamus TGCTGCCACT (6) 7.2 0.0072 Hypothalamus GGAGGCACTC (4) 1.8 0.0018 Hypothalamus TCACCTTCTG (4) 1.8 0.0018 Hypothalamus TGGGTGTTAG (2) 1.8 0.0018 E12.5 retina TCACCTTCTG (4) 11.3 0.0113 E12.5 retina TGGGTGCTGG (64) 9.4 0.0094 E12.5 retina AAGAAAGAGT (2) 1.9 0.0019 E12.5 retina AAGCTGGGTG (8) 1.9 0.0019 E14.5 retina TGGGTGCTGG (64) 54.7 0.0547 E14.5 retina TCACCTTCTG (4) 12.8 0.0128 E14.5 retina CCCTTAAGAA (7) 1.8 0.0018 E14.5 retina GGAGGCACTC (4) 1.8 0.0018 E14.5 retina TGCTGCCACT (6) 1.8 0.0018 E14.5 retina TGGGTGTTAG (2) 1.8 0.0018 E16.5 retina TGGGTGCTGG (64) 41.7 0.0417 E16.5 retina TCACCTTCTG (4) 5.4 0.0054 E16.5 retina CCCTTAAGAA (7) 3.6 0.0036 E16.5 retina AAGAAAGAGT (2) 1.8 0.0018 E16.5 retina ATTTCGGATG (3) 1.8 0.0018 E16.5 retina TGCTGCCACT (6) 1.8 0.0018 E18.5 retina TGGGTGCTGG (64) 20 0.02 E18.5 retina TGCTGCCACT (6) 16.4 0.0164 E18.5 retina TCACCTTCTG (4) 3.6 0.0036 E18.5 retina TGGGTGTTAG (2) 3.6 0.0036 E18.5 retina AAGCTGGGTG (8) 1.8 0.0018 E18.5 retina ATTTCGGATG (3) 1.8 0.0018 E18.5 retina GGAGGCACTC (4) 1.8 0.0018 E18.5 retina TGTGTCAAGG (5) 1.8 0.0018 P0.5 retina TGGGTGCTGG (64) 11.8 0.0118 P0.5 retina CCCTTAAGAA (7) 5.9 0.0059 P0.5 retina TGCTGCCACT (6) 5.9 0.0059 P0.5 retina AAGCTGGCGT (2) 2 0.002 P0.5 retina TCACCTTCTG (4) 2 0.002 P2.5 retina TGGGTGCTGG (64) 17.6 0.0176 P2.5 retina TGCTGCCACT (6) 8.8 0.0088 P2.5 retina GGAGGCACTC (4) 3.5 0.0035 P2.5 retina AAGCTGGGTG (8) 1.8 0.0018 P2.5 retina CCCTTAAGAA (7) 1.8 0.0018 P2.5 retina TCACCTTCTG (4) 1.8 0.0018 P4.5 retina TGGGTGCTGG (64) 9.9 0.0099 P4.5 retina TGCTGCCACT (6) 7.9 0.0079 P4.5 retina AAGCTGGGTG (8) 2 0.002 P4.5 retina CCCTTAAGAA (7) 2 0.002 P4.5 retina GGAGGCACTC (4) 2 0.002 P6.5 retina TGGGTGCTGG (64) 13.3 0.0133 P6.5 retina TGCTGCCACT (6) 11.7 0.0117 P6.5 retina TCACCTTCTG (4) 6.7 0.0067 P6.5 retina CCCTTAAGAA (7) 5 0.005 P6.5 retina TGGGTGTTAG (2) 3.3 0.0033 P10.5 crx- retina TGGGTGCTGG (64) 20.4 0.0204 P10.5 crx- retina TCACCTTCTG (4) 9.3 0.0093 P10.5 crx- retina TGCTGCCACT (6) 5.6 0.0056 P10.5 crx- retina AAGAAAGAGT (2) 1.9 0.0019 P10.5 crx+ retina TGGGTGCTGG (64) 15.4 0.0154 P10.5 crx+ retina GGAGGCACTC (4) 3.8 0.0038 P10.5 crx+ retina TCACCTTCTG (4) 3.8 0.0038 P10.5 crx+ retina ATTTCGGATG (3) 1.9 0.0019 P10.5 crx+ retina CCCTTAAGAA (7) 1.9 0.0019 P10.5 crx+ retina TGCTGCCACT (6) 1.9 0.0019 Adult retinal TGGGTGCTGG (64) 13 0.013 Adult retinal TCACCTTCTG (4) 7.4 0.0074 Adult retinal TGGAGATGCT (4) 7.4 0.0074 Adult retinal CCCTTAAGAA (7) 3.7 0.0037 Adult retinal GGAGGCACTC (4) 1.9 0.0019 Adult retinal TGCTGCCACT (6) 1.9 0.0019 Adult retinal TGTGTCAAGG (5) 1.9 0.0019 ONL TGGGTGCTGG (64) 40.2 0.0402 ONL TGGAGATGCT (4) 5.7 0.0057 ONL TGTGTCAAGG (5) 3.8 0.0038 ONL TGCTGCCACT (6) 1.9 0.0019