Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288974	Arpc5	actin related protein 2/3 complex, subunit 5	1		67771
Gene Ontology	actin cytoskeleton | actin filament organization | Arp2/3 protein complex | Arp2/3 protein complex | cell motility | cytoplasm | structural constituent of cytoskeleton
Human Homolog	ARPC5[actin related protein 2/3 complex, subunit 5, 16kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 113 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTTCCCGAG 9.8 0.0098 P8 Cb GC GGGGGAAATC (4) 6.5 0.0065 P8 Cb GC TTGTGAGAAT (2) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC GAAGAAAATG (9) 3.3 0.0033 P8 Cb GC ACAGCTGCCC (3) 1.6 0.0016 Cb medulloblastoma GAGGAGTGGG (2) 43.9 0.0439 Cb medulloblastoma TTGTGAGAAT (2) 11.6 0.0116 Cb medulloblastoma GAAGAAAATG (9) 4.6 0.0046 Cb medulloblastoma GGAAATGTTC (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TTGTGAGAAT (2) 10.3 0.0103 P8 GC+1d culture ATTTCCCGAG 9.1 0.0091 P8 GC+1d culture GAAGAAAATG (9) 6.8 0.0068 P8 GC+1d culture GGGGGAAATC (4) 1.1 0.0011 P8 GC+SHH+1d culture TTGTGAGAAT (2) 16.4 0.0164 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture ATTTCCCGAG 4.7 0.0047 P8 GC+SHH+1d culture GAAGAAAATG (9) 4.7 0.0047 P8 GC+SHH+1d culture ACAGCTGCCC (3) 1.2 0.0012 P8 GC+SHH+1d culture GAGGAGTGGG (2) 1.2 0.0012 P8 GC+SHH+1d culture GGAAATGTTC (3) 1.2 0.0012 3T3 fibroblasts ATTTCCCGAG 17.5 0.0175 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex GGGGGAAATC (4) 19.8 0.0198 E15 cortex ATTTCCCGAG 9.9 0.0099 E15 cortex GCTGCTGGAG (6) 9.9 0.0099 E15 cortex GAAGAAAATG (9) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TTGTGAGAAT (2) 27.3 0.0273 P1 cortex GGGGGAAATC (4) 18.2 0.0182 P1 cortex ATTTCCCGAG 13.6 0.0136 P1 cortex GAAGAAAATG (9) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTGTGAGAAT (2) 18.1 0.0181 Hypothalamus ATTTCCCGAG 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina ATTTCCCGAG 5.6 0.0056 E12.5 retina TTGTGAGAAT (2) 5.6 0.0056 E12.5 retina GAAGAAAATG (9) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina TTGTGAGAAT (2) 14.6 0.0146 E14.5 retina GAAGAAAATG (9) 5.5 0.0055 E14.5 retina ATTTCCCGAG 1.8 0.0018 E14.5 retina GGGGGAAATC (4) 1.8 0.0018 E16.5 retina ACAGCTGCCT (2) 10.9 0.0109 E16.5 retina ATTTCCCGAG 10.9 0.0109 E16.5 retina TTGTGAGAAT (2) 9.1 0.0091 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GAAGAAAATG (9) 3.6 0.0036 E16.5 retina ACAGCTGCCC (3) 1.8 0.0018 E16.5 retina GGAAATGTTC (3) 1.8 0.0018 E18.5 retina TTGTGAGAAT (2) 12.7 0.0127 E18.5 retina GAAGAAAATG (9) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina ACAGCTGCCT (2) 1.8 0.0018 E18.5 retina ATTTCCCGAG 1.8 0.0018 P0.5 retina TTGTGAGAAT (2) 9.8 0.0098 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina ATTTCCCGAG 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina ACAGCTGCCC (3) 2 0.002 P0.5 retina ACAGCTGCCT (2) 2 0.002 P0.5 retina GGGGGAAATC (4) 2 0.002 P2.5 retina TTGTGAGAAT (2) 14.1 0.0141 P2.5 retina GAAGAAAATG (9) 12.3 0.0123 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GCTGCTGGAG (6) 1.8 0.0018 P2.5 retina GGGGGAAATC (4) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina TTGTGAGAAT (2) 25.8 0.0258 P4.5 retina GAAGAAAATG (9) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina ATTTCCCGAG 8.3 0.0083 P6.5 retina TTGTGAGAAT (2) 8.3 0.0083 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina ACAGCTGCCT (2) 6.7 0.0067 P6.5 retina GAAGAAAATG (9) 5 0.005 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina GAGGAGTGGG (2) 1.7 0.0017 P6.5 retina GGGGGAAATC (4) 1.7 0.0017 P10.5 crx- retina GAAGAAAATG (9) 26 0.026 P10.5 crx- retina GAGGAGTGGG (2) 13 0.013 P10.5 crx- retina ACAGCTGCCT (2) 7.4 0.0074 P10.5 crx- retina ATTTCCCGAG 7.4 0.0074 P10.5 crx- retina TTGTGAGAAT (2) 1.9 0.0019 P10.5 crx+ retina GAAGAAAATG (9) 11.5 0.0115 P10.5 crx+ retina TTGTGAGAAT (2) 9.6 0.0096 P10.5 crx+ retina ACAGCTGCCT (2) 7.7 0.0077 P10.5 crx+ retina GAGGAGTGGG (2) 7.7 0.0077 P10.5 crx+ retina ATTTCCCGAG 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina ACAGCTGCCC (3) 1.9 0.0019 P10.5 crx+ retina GGGGGAAATC (4) 1.9 0.0019 Adult retinal GAGGAGTGGG (2) 27.8 0.0278 Adult retinal ACAGCTGCCT (2) 24.1 0.0241 Adult retinal GAAGAAAATG (9) 7.4 0.0074 Adult retinal TTGTGAGAAT (2) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal ATTTCCCGAG 1.9 0.0019 Adult retinal GGGGGAAATC (4) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL ACAGCTGCCT (2) 24.9 0.0249 ONL GAAGAAAATG (9) 19.2 0.0192 ONL GAGGAGTGGG (2) 11.5 0.0115 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL ATTTCCCGAG 1.9 0.0019 ONL TTGTGAGAAT (2) 1.9 0.0019