Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.289490	Nr1d1	nuclear receptor subfamily 1, group D, member 1	11		217166
Gene Ontology	circadian rhythm | DNA binding | nucleus | receptor activity | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	NR1D1[nuclear receptor subfamily 1, group D, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 111 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTGTAGCCC (2) 29.4 0.0294 P8 Cb GC GCGGGGGGGG (18) 1.6 0.0016 Cb medulloblastoma TCTGTAGCCC (2) 62.4 0.0624 Cb medulloblastoma GGGGGGGGGG (112) 6.9 0.0069 Cb medulloblastoma CTCCCATCCT (6) 2.3 0.0023 Cb medulloblastoma GACACCGTCC 2.3 0.0023 Cb medulloblastoma GCGGGGGGGG (18) 2.3 0.0023 P8 GC+1d culture TCTGTAGCCC (2) 41.1 0.0411 P8 GC+1d culture CCCGTCTGCC (4) 4.6 0.0046 P8 GC+1d culture GCGGTGGGGG (2) 4.6 0.0046 P8 GC+1d culture GGGGGGGGGG (112) 2.3 0.0023 P8 GC+1d culture AGTCTGTTTC (2) 1.1 0.0011 P8 GC+1d culture CATTCCGAGA (2) 1.1 0.0011 P8 GC+1d culture CCACTCGTGG (3) 1.1 0.0011 P8 GC+1d culture CTCCCATCCT (6) 1.1 0.0011 P8 GC+1d culture GACACCGTCC 1.1 0.0011 P8 GC+1d culture GCCACAGGCT (2) 1.1 0.0011 P8 GC+SHH+1d culture TCTGTAGCCC (2) 31.6 0.0316 P8 GC+SHH+1d culture GGGGGGGGGG (112) 7 0.007 P8 GC+SHH+1d culture AGTCTGTTTC (2) 2.3 0.0023 P8 GC+SHH+1d culture CCACTCGTGG (3) 1.2 0.0012 P8 GC+SHH+1d culture CTCCCATCCT (6) 1.2 0.0012 P8 GC+SHH+1d culture GCAGCTTCCA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCGGTGGGGG (2) 1.2 0.0012 P8 GC+SHH+1d culture GTGCTACTGT (2) 1.2 0.0012 3T3 fibroblasts CTCCCATCCT (6) 7 0.007 3T3 fibroblasts TCTGTAGCCC (2) 7 0.007 3T3 fibroblasts CCACTCGTGG (3) 3.5 0.0035 3T3 fibroblasts GCAGCTTCCA (4) 3.5 0.0035 3T3 fibroblasts GGGGGGGGGG (112) 3.5 0.0035 E15 cortex TCTGTAGCCC (2) 59.4 0.0594 E15 cortex GACACCGTCC 9.9 0.0099 E15 cortex CCCGTCTGCC (4) 4.9 0.0049 E15 cortex GCGGTGGGGG (2) 4.9 0.0049 E15 cortex GGGGGGGGGG (112) 4.9 0.0049 P1 cortex TCTGTAGCCC (2) 104.5 0.1045 P1 cortex AGTCTGTTTC (2) 4.5 0.0045 P1 cortex CCACTCGTGG (3) 4.5 0.0045 P1 cortex CCCGTCTGCC (4) 4.5 0.0045 P1 cortex CTTCTTGTGT (4) 4.5 0.0045 P1 cortex GACACCGTCC 4.5 0.0045 Hypothalamus TCTGTAGCCC (2) 47.1 0.0471 Hypothalamus CCACTCGTGG (3) 3.6 0.0036 Hypothalamus AGTCTGTTTC (2) 1.8 0.0018 Hypothalamus CATTCCGAGA (2) 1.8 0.0018 Hypothalamus CTCCCATCCT (6) 1.8 0.0018 Hypothalamus CTTCTTGTGT (4) 1.8 0.0018 Hypothalamus GAAGACAGCA (5) 1.8 0.0018 Hypothalamus GACACCGTCC 1.8 0.0018 Hypothalamus GCCACAGGCT (2) 1.8 0.0018 Hypothalamus GGGGGGGGGG (112) 1.8 0.0018 Hypothalamus GTGCTACTGT (2) 1.8 0.0018 E12.5 retina TCTGTAGCCC (2) 13.1 0.0131 E12.5 retina CTTCTTGTGT (4) 1.9 0.0019 E12.5 retina GCGGGGGGGG (18) 1.9 0.0019 E14.5 retina TCTGTAGCCC (2) 23.7 0.0237 E14.5 retina CTTCTTGTGT (4) 1.8 0.0018 E14.5 retina GCAGCTTCCA (4) 1.8 0.0018 E16.5 retina TCTGTAGCCC (2) 56.1 0.0561 E16.5 retina AGTCTGTTTC (2) 1.8 0.0018 E16.5 retina CTTCTTGTGT (4) 1.8 0.0018 E16.5 retina GCCACAGGCT (2) 1.8 0.0018 E18.5 retina TCTGTAGCCC (2) 40 0.04 E18.5 retina AGTCTGTTTC (2) 1.8 0.0018 P0.5 retina TCTGTAGCCC (2) 47.1 0.0471 P0.5 retina GACACCGTCC 3.9 0.0039 P0.5 retina AGTCTGTTTC (2) 2 0.002 P0.5 retina CTTCTTGTGT (4) 2 0.002 P0.5 retina GAAGACAGCA (5) 2 0.002 P0.5 retina GCGGTGGGGG (2) 2 0.002 P2.5 retina TCTGTAGCCC (2) 54.6 0.0546 P2.5 retina GGGGGGGGGG (112) 7 0.007 P2.5 retina GAAGACAGCA (5) 3.5 0.0035 P2.5 retina GCGGTGGGGG (2) 3.5 0.0035 P2.5 retina CATTCCGAGA (2) 1.8 0.0018 P2.5 retina GTGCTACTGT (2) 1.8 0.0018 P4.5 retina TCTGTAGCCC (2) 55.5 0.0555 P4.5 retina GGGGGGGGGG (112) 9.9 0.0099 P4.5 retina AGTCTGTTTC (2) 5.9 0.0059 P4.5 retina CTTCTTGTGT (4) 4 0.004 P4.5 retina CTCCCATCCT (6) 2 0.002 P4.5 retina GCGGTGGGGG (2) 2 0.002 P4.5 retina GTGCTACTGT (2) 2 0.002 P6.5 retina TCTGTAGCCC (2) 85 0.085 P6.5 retina AGTCTGTTTC (2) 3.3 0.0033 P6.5 retina CATTCCGAGA (2) 3.3 0.0033 P6.5 retina CTTCTTGTGT (4) 3.3 0.0033 P6.5 retina GCGGTGGGGG (2) 3.3 0.0033 P6.5 retina GGGGGGGGGG (112) 3.3 0.0033 P6.5 retina GCGGGGGGGG (18) 1.7 0.0017 P6.5 retina GTGCTACTGT (2) 1.7 0.0017 P10.5 crx- retina TCTGTAGCCC (2) 94.7 0.0947 P10.5 crx- retina CATTCCGAGA (2) 3.7 0.0037 P10.5 crx- retina CCACTCGTGG (3) 1.9 0.0019 P10.5 crx- retina CTCCCATCCT (6) 1.9 0.0019 P10.5 crx- retina CTTCTTGTGT (4) 1.9 0.0019 P10.5 crx- retina GCCACAGGCT (2) 1.9 0.0019 P10.5 crx- retina GCGGTGGGGG (2) 1.9 0.0019 P10.5 crx+ retina TCTGTAGCCC (2) 63.4 0.0634 P10.5 crx+ retina GGGGGGGGGG (112) 9.6 0.0096 P10.5 crx+ retina CTCCCATCCT (6) 1.9 0.0019 P10.5 crx+ retina GCGGGGGGGG (18) 1.9 0.0019 Adult retinal TCTGTAGCCC (2) 27.8 0.0278 Adult retinal CTCCCATCCT (6) 5.6 0.0056 Adult retinal GGGGGGGGGG (112) 3.7 0.0037 Adult retinal CATTCCGAGA (2) 1.9 0.0019 Adult retinal CCCGTCTGCC (4) 1.9 0.0019 Adult retinal GCGGTGGGGG (2) 1.9 0.0019 ONL TCTGTAGCCC (2) 11.5 0.0115 ONL AGTCTGTTTC (2) 1.9 0.0019 ONL GGGGGGGGGG (112) 1.9 0.0019