Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.289915	Ddb1	damage specific DNA binding protein 1	19	19 5.0 cM	13194
Gene Ontology	damaged DNA binding | DNA binding | DNA repair | nucleic acid binding | nucleus
Human Homolog	DDB1[damage-specific DNA binding protein 1, 127kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 100 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAAGGTTT (5) 14.7 0.0147 P8 Cb GC GGAGGCTTTT (5) 4.9 0.0049 P8 Cb GC AGAACAAAAC (5) 3.3 0.0033 P8 Cb GC GCCTCTCCCC (3) 3.3 0.0033 P8 Cb GC TGAAAACCTA (2) 3.3 0.0033 P8 Cb GC CAGAACCGAC 1.6 0.0016 P8 Cb GC CTGATGCCTA (5) 1.6 0.0016 Cb medulloblastoma GGGAAGGTTT (5) 6.9 0.0069 Cb medulloblastoma TGAAAACCTA (2) 6.9 0.0069 Cb medulloblastoma GCACACCCCA (3) 2.3 0.0023 Cb medulloblastoma GGAGCTTTTT (5) 2.3 0.0023 P8 GC+1d culture GGGAAGGTTT (5) 6.8 0.0068 P8 GC+1d culture GGAGGCTTTT (5) 4.6 0.0046 P8 GC+1d culture TGAAAACCTA (2) 3.4 0.0034 P8 GC+1d culture GCCTCTCCCC (3) 1.1 0.0011 P8 GC+1d culture GGAGCTTTTT (5) 1.1 0.0011 P8 GC+1d culture TGTGGAAACA (7) 1.1 0.0011 P8 GC+SHH+1d culture GGGAAGGTTT (5) 10.5 0.0105 P8 GC+SHH+1d culture GGAGGCTTTT (5) 8.2 0.0082 P8 GC+SHH+1d culture TGTGGAAACA (7) 5.9 0.0059 P8 GC+SHH+1d culture TGAAAACCTA (2) 4.7 0.0047 P8 GC+SHH+1d culture ATTCTCCAGG (2) 1.2 0.0012 3T3 fibroblasts GGAGGCTTTT (5) 31.5 0.0315 3T3 fibroblasts CAGAACCGAC 3.5 0.0035 3T3 fibroblasts GGGAAGGTTT (5) 3.5 0.0035 3T3 fibroblasts TGAAAACCTA (2) 3.5 0.0035 3T3 fibroblasts TGTGGAAACA (7) 3.5 0.0035 E15 cortex GGAGGCTTTT (5) 9.9 0.0099 E15 cortex AGAACAAAAC (5) 4.9 0.0049 E15 cortex TGTGGAAACA (7) 4.9 0.0049 P1 cortex ATTCTCCAGG (2) 4.5 0.0045 P1 cortex GGGAAGGTTT (5) 4.5 0.0045 P1 cortex TCCTCTGTGG (3) 4.5 0.0045 P1 cortex TGAAAACCTA (2) 4.5 0.0045 P1 cortex TGTGGAAACA (7) 4.5 0.0045 Hypothalamus TGAAAACCTA (2) 5.4 0.0054 Hypothalamus CAGACCAGCT (2) 3.6 0.0036 Hypothalamus ATTCTCCAGG (2) 1.8 0.0018 Hypothalamus GGAGGCTTTT (5) 1.8 0.0018 Hypothalamus GGGAAGGTTT (5) 1.8 0.0018 E12.5 retina TGAAAACCTA (2) 5.6 0.0056 E12.5 retina ATTCTCCAGG (2) 1.9 0.0019 E12.5 retina CTGATGCCTA (5) 1.9 0.0019 E12.5 retina GGAGGCTTTT (5) 1.9 0.0019 E12.5 retina TGTGGAAACA (7) 1.9 0.0019 E14.5 retina ATTCTCCAGG (2) 3.6 0.0036 E14.5 retina GGGAAGGTTT (5) 3.6 0.0036 E14.5 retina TGAAAACCTA (2) 3.6 0.0036 E14.5 retina ACAGCATTGA (3) 1.8 0.0018 E14.5 retina GGAGGCTTTT (5) 1.8 0.0018 E14.5 retina TCCTCTGTGG (3) 1.8 0.0018 E16.5 retina TGAAAACCTA (2) 5.4 0.0054 E16.5 retina ACAGCATTGA (3) 3.6 0.0036 E16.5 retina ATTCTCCAGG (2) 3.6 0.0036 E16.5 retina GGAGGCTTTT (5) 1.8 0.0018 E16.5 retina GGGAAGGTTT (5) 1.8 0.0018 E16.5 retina TGTGGAAACA (7) 1.8 0.0018 E18.5 retina GGGAAGGTTT (5) 7.3 0.0073 E18.5 retina GGAGGCTTTT (5) 5.5 0.0055 E18.5 retina TGAAAACCTA (2) 5.5 0.0055 E18.5 retina ATTCTCCAGG (2) 1.8 0.0018 P0.5 retina GGAGGCTTTT (5) 21.6 0.0216 P0.5 retina TGAAAACCTA (2) 5.9 0.0059 P0.5 retina GGGAAGGTTT (5) 3.9 0.0039 P2.5 retina TGAAAACCTA (2) 8.8 0.0088 P2.5 retina GGAGGCTTTT (5) 5.3 0.0053 P2.5 retina ATTCTCCAGG (2) 3.5 0.0035 P2.5 retina GGGAAGGTTT (5) 3.5 0.0035 P2.5 retina CAGACCAGCT (2) 1.8 0.0018 P2.5 retina GCCTCTCCCC (3) 1.8 0.0018 P2.5 retina TGTGGAAACA (7) 1.8 0.0018 P4.5 retina GGGAAGGTTT (5) 15.9 0.0159 P4.5 retina ATTCTCCAGG (2) 4 0.004 P4.5 retina TGAAAACCTA (2) 4 0.004 P4.5 retina GCCTCTCCCC (3) 2 0.002 P4.5 retina GGAGGCTTTT (5) 2 0.002 P6.5 retina GGGAAGGTTT (5) 10 0.01 P6.5 retina GGAGGCTTTT (5) 5 0.005 P6.5 retina TGAAAACCTA (2) 5 0.005 P6.5 retina ATTCTCCAGG (2) 1.7 0.0017 P6.5 retina CAGACCAGCT (2) 1.7 0.0017 P6.5 retina CTGATGCCTA (5) 1.7 0.0017 P10.5 crx- retina GGGAAGGTTT (5) 9.3 0.0093 P10.5 crx- retina GGAGGCTTTT (5) 3.7 0.0037 P10.5 crx- retina TGAAAACCTA (2) 3.7 0.0037 P10.5 crx- retina ATTCTCCAGG (2) 1.9 0.0019 P10.5 crx- retina GCCTCTCCCC (3) 1.9 0.0019 P10.5 crx+ retina GCACACCCCA (3) 3.8 0.0038 P10.5 crx+ retina GGAGGCTTTT (5) 3.8 0.0038 P10.5 crx+ retina GGAGCTTTTT (5) 1.9 0.0019 P10.5 crx+ retina GGGAAGGTTT (5) 1.9 0.0019 Adult retinal GGAGGCTTTT (5) 20.4 0.0204 Adult retinal GGGAAGGTTT (5) 9.3 0.0093 Adult retinal TGAAAACCTA (2) 5.6 0.0056 Adult retinal CAGACCAGCT (2) 1.9 0.0019 Adult retinal CTGATGCCTA (5) 1.9 0.0019 ONL GGAGGCTTTT (5) 7.7 0.0077 ONL GGGAAGGTTT (5) 5.7 0.0057 ONL CAGAACCGAC 1.9 0.0019 ONL TGAAAACCTA (2) 1.9 0.0019