Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.290110	Dnajb6	DnaJ (Hsp40) homolog, subfamily B, member 6	5		23950
Gene Ontology	protein folding
Human Homolog	DNAJB6[DnaJ (Hsp40) homolog, subfamily B, member 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 140 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AGAAAAAAAA (47) 17.9 0.0179 P8 Cb GC GATGTCGGCA 6.5 0.0065 P8 Cb GC AGTGGGGTCT (3) 4.9 0.0049 P8 Cb GC GGCAAAAAAA (17) 1.6 0.0016 P8 Cb GC TTTCCTTAGG (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AGAAAAAAAA (47) 53.2 0.0532 Cb medulloblastoma GATGTCGGCA 16.2 0.0162 Cb medulloblastoma GGCAAAAAAA (17) 11.6 0.0116 Cb medulloblastoma AGTGGGGTCT (3) 6.9 0.0069 Cb medulloblastoma GGGGTCTCAC 4.6 0.0046 Cb medulloblastoma TTTCCTTAGG (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GATGTCGGCA 13.7 0.0137 P8 GC+1d culture AGAAAAAAAA (47) 8 0.008 P8 GC+1d culture TTTCCTTAGG (5) 5.7 0.0057 P8 GC+1d culture AGTGGGGTCT (3) 2.3 0.0023 P8 GC+1d culture CTGGTGTTAC 1.1 0.0011 P8 GC+1d culture GGGGTCTCAC 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AGAAAAAAAA (47) 14.1 0.0141 P8 GC+SHH+1d culture GATGTCGGCA 10.5 0.0105 P8 GC+SHH+1d culture AGTGGGGTCT (3) 9.4 0.0094 P8 GC+SHH+1d culture TTTCCTTAGG (5) 3.5 0.0035 P8 GC+SHH+1d culture AGGATCTATT (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGGTGTTAC 1.2 0.0012 P8 GC+SHH+1d culture GGCAAAAAAA (17) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts AGAAAAAAAA (47) 3.5 0.0035 3T3 fibroblasts CACAAGTAGA (2) 3.5 0.0035 3T3 fibroblasts CTGGTGTTAC 3.5 0.0035 3T3 fibroblasts GGCGTCAGGA (2) 3.5 0.0035 3T3 fibroblasts GGGGTCTCAC 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GATGTCGGCA 24.7 0.0247 E15 cortex AGAAAAAAAA (47) 14.8 0.0148 E15 cortex GCCAAGGGGA (4) 9.9 0.0099 E15 cortex AGTGGGGTCT (3) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AGAAAAAAAA (47) 9.1 0.0091 P1 cortex TTTCCTTAGG (5) 9.1 0.0091 P1 cortex AGTGGGGTCT (3) 4.5 0.0045 P1 cortex GGGGTCTCAC 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AGAAAAAAAA (47) 32.6 0.0326 Hypothalamus GATGTCGGCA 7.2 0.0072 Hypothalamus AGTGGGGTCT (3) 5.4 0.0054 Hypothalamus CTGGTGTTAC 3.6 0.0036 Hypothalamus GGCAAAAAAA (17) 3.6 0.0036 Hypothalamus GGGGTCTCAC 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AGAAAAAAAA (47) 20.7 0.0207 E12.5 retina GATGTCGGCA 5.6 0.0056 E12.5 retina TTTCCTTAGG (5) 3.8 0.0038 E12.5 retina AGTGGGGTCT (3) 1.9 0.0019 E12.5 retina CTGGTGTTAC 1.9 0.0019 E12.5 retina GCCAAGGGGA (4) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGAAAAAAAA (47) 20 0.02 E14.5 retina GATGTCGGCA 10.9 0.0109 E14.5 retina AGTGGGGTCT (3) 3.6 0.0036 E14.5 retina GGCAAAAAAA (17) 3.6 0.0036 E14.5 retina CACAACTAGA 1.8 0.0018 E14.5 retina CTGGTGTTAC 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AGAAAAAAAA (47) 10.9 0.0109 E16.5 retina TTTCCTTAGG (5) 7.2 0.0072 E16.5 retina GATGTCGGCA 5.4 0.0054 E16.5 retina GATCTGCTTC (2) 3.6 0.0036 E16.5 retina AGTGGGGTCT (3) 1.8 0.0018 E16.5 retina GGGGTCTCAC 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AGAAAAAAAA (47) 29.1 0.0291 E18.5 retina AGTGGGGTCT (3) 3.6 0.0036 E18.5 retina GATGTCGGCA 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGAAAAAAAA (47) 13.7 0.0137 P0.5 retina GATGTCGGCA 7.9 0.0079 P0.5 retina CTGGTGTTAC 5.9 0.0059 P0.5 retina AGGATCTATT (2) 3.9 0.0039 P0.5 retina CACAAGTAGA (2) 2 0.002 P0.5 retina GATCTGCTTC (2) 2 0.002 P0.5 retina GGGGTCTCAC 2 0.002 P0.5 retina TTTCCTTAGG (5) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AGAAAAAAAA (47) 17.6 0.0176 P2.5 retina AGTGGGGTCT (3) 5.3 0.0053 P2.5 retina CTGGTGTTAC 3.5 0.0035 P2.5 retina TTTCCTTAGG (5) 3.5 0.0035 P2.5 retina GATGTCGGCA 1.8 0.0018 P2.5 retina GGCGTCAGGA (2) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AGAAAAAAAA (47) 31.7 0.0317 P4.5 retina AGTGGGGTCT (3) 4 0.004 P4.5 retina GATGTCGGCA 4 0.004 P4.5 retina ATTAAAACAG (4) 2 0.002 P4.5 retina GGCAAAAAAA (17) 2 0.002 P4.5 retina TTTCCTTAGG (5) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GATGTCGGCA 15 0.015 P6.5 retina AGAAAAAAAA (47) 13.3 0.0133 P6.5 retina GGCAAAAATT (4) 3.3 0.0033 P6.5 retina TTTCCTTAGG (5) 3.3 0.0033 P6.5 retina AGGATCTATT (2) 1.7 0.0017 P6.5 retina AGTGGGGTCT (3) 1.7 0.0017 P6.5 retina ATTAAAACAG (4) 1.7 0.0017 P6.5 retina CACAAGTAGA (2) 1.7 0.0017 P6.5 retina GGCAAAAAAA (17) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TTTCCTTAGG (5) 16.7 0.0167 P10.5 crx- retina GATGTCGGCA 14.9 0.0149 P10.5 crx- retina AGAAAAAAAA (47) 7.4 0.0074 P10.5 crx- retina CACAAGTAGA (2) 1.9 0.0019 P10.5 crx- retina GATCTGCTTC (2) 1.9 0.0019 P10.5 crx- retina GGCAAAAAAA (17) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GATGTCGGCA 21.1 0.0211 P10.5 crx+ retina AGAAAAAAAA (47) 5.8 0.0058 P10.5 crx+ retina AGTGGGGTCT (3) 5.8 0.0058 P10.5 crx+ retina CTGGTGTTAC 3.8 0.0038 P10.5 crx+ retina GGCAAAAAAA (17) 3.8 0.0038 P10.5 crx+ retina GGGGTCTCAC 3.8 0.0038 P10.5 crx+ retina ATTAAAACAG (4) 1.9 0.0019 P10.5 crx+ retina CACAACTAGA 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GATGTCGGCA 11.1 0.0111 Adult retinal TTTCCTTAGG (5) 7.4 0.0074 Adult retinal AGAAAAAAAA (47) 5.6 0.0056 Adult retinal CTGGTGTTAC 3.7 0.0037 Adult retinal AGTGGGGTCT (3) 1.9 0.0019 Adult retinal CACAAGTAGA (2) 1.9 0.0019 Adult retinal GATCTGCTTC (2) 1.9 0.0019 Adult retinal GCCAAGGGGA (4) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AGAAAAAAAA (47) 19.2 0.0192 ONL TTTCCTTAGG (5) 9.6 0.0096 ONL CACAACTAGA 3.8 0.0038 ONL AGTGGGGTCT (3) 1.9 0.0019 ONL GATGTCGGCA 1.9 0.0019