Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.290442	Pkd1	polycystic kidney disease 1 homolog	17	17 A3.3 (17 10.4 cM)	18763
Gene Ontology	calcium channel activity | calcium ion transport | cartilage condensation | cell cycle arrest | cilium | heart development | integral to membrane | JAK-STAT cascade | membrane | neuropeptide signaling pathway | protein binding | sugar binding
Human Homolog	PKD1[polycystic kidney disease 1 (autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 21 In Situ Hybridization Images

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SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAACCCCAGG (6) 4.9 0.0049 P8 Cb GC GCGGGTGGGG (3) 4.9 0.0049 P8 Cb GC CTTCTCTCTG (3) 1.6 0.0016 Cb medulloblastoma GCGGGTGGGG (3) 23.1 0.0231 Cb medulloblastoma CTTCTCTCTG (3) 4.6 0.0046 Cb medulloblastoma AAATAAACTG (5) 2.3 0.0023 P8 GC+1d culture AAATAAACTG (5) 4.6 0.0046 P8 GC+1d culture GCGGGTGGGG (3) 4.6 0.0046 P8 GC+SHH+1d culture GCGGGTGGGG (3) 7 0.007 P8 GC+SHH+1d culture AAATAAACTG (5) 4.7 0.0047 P8 GC+SHH+1d culture CTTCTCTCTG (3) 3.5 0.0035 P8 GC+SHH+1d culture GGGGCAAGCC (5) 2.3 0.0023 3T3 fibroblasts GCGGGTGGGG (3) 17.5 0.0175 E15 cortex GCGGGTGGGG (3) 29.7 0.0297 E15 cortex CTTCTCTCTG (3) 4.9 0.0049 E15 cortex GGGGCAAGCC (5) 4.9 0.0049 P1 cortex AAATAAACTG (5) 13.6 0.0136 P1 cortex CTTCTCTCTG (3) 4.5 0.0045 P1 cortex GCGGGTGGGG (3) 4.5 0.0045 Hypothalamus GCGGGTGGGG (3) 5.4 0.0054 Hypothalamus AAATAAACTG (5) 1.8 0.0018 Hypothalamus CTTCTCTCTG (3) 1.8 0.0018 E12.5 retina AAATAAACTG (5) 9.4 0.0094 E12.5 retina GCGGGTGGGG (3) 7.5 0.0075 E12.5 retina CTTCTCTCTG (3) 3.8 0.0038 E12.5 retina CACTGGCTGC (2) 1.9 0.0019 E14.5 retina AAATAAACTG (5) 12.8 0.0128 E14.5 retina GCGGGTGGGG (3) 7.3 0.0073 E14.5 retina CACTGGCTGC (2) 1.8 0.0018 E16.5 retina AAATAAACTG (5) 12.7 0.0127 E16.5 retina GCGGGTGGGG (3) 9.1 0.0091 E16.5 retina CACTGGCTGC (2) 1.8 0.0018 E16.5 retina CTTCTCTCTG (3) 1.8 0.0018 E18.5 retina AAATAAACTG (5) 5.5 0.0055 E18.5 retina GCGGGTGGGG (3) 3.6 0.0036 P0.5 retina GCGGGTGGGG (3) 5.9 0.0059 P0.5 retina AAATAAACTG (5) 3.9 0.0039 P0.5 retina CTTCTCTCTG (3) 2 0.002 P0.5 retina GGGGCAAGCC (5) 2 0.002 P2.5 retina AAATAAACTG (5) 14.1 0.0141 P2.5 retina GCGGGTGGGG (3) 10.6 0.0106 P4.5 retina AAATAAACTG (5) 5.9 0.0059 P4.5 retina GCGGGTGGGG (3) 5.9 0.0059 P6.5 retina GCGGGTGGGG (3) 16.7 0.0167 P6.5 retina AAATAAACTG (5) 13.3 0.0133 P6.5 retina CTTCTCTCTG (3) 3.3 0.0033 P10.5 crx- retina GCGGGTGGGG (3) 9.3 0.0093 P10.5 crx- retina AAATAAACTG (5) 7.4 0.0074 P10.5 crx- retina GGGGCAAGCC (5) 3.7 0.0037 P10.5 crx+ retina GCGGGTGGGG (3) 30.8 0.0308 P10.5 crx+ retina AAATAAACTG (5) 9.6 0.0096 P10.5 crx+ retina CTTCTCTCTG (3) 1.9 0.0019 Adult retinal GCGGGTGGGG (3) 20.4 0.0204 Adult retinal GGGGCAAGCC (5) 1.9 0.0019 ONL AAATAAACTG (5) 5.7 0.0057 ONL GCGGGTGGGG (3) 5.7 0.0057