Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29055	E430007M08Rik	RIKEN cDNA E430007M08 gene	11		319869
Mm.29055	Cbx1	chromobox homolog 1 (Drosophila HP1 beta)	11	11 58.0 cM	12412
Gene Ontology	centric heterochromatin | chromatin | chromatin assembly/disassembly | chromatin binding | chromosome, pericentric region | nuclear heterochromatin | nucleoplasm | nucleus | protein binding
Human Homolog	CBX1[chromobox homolog 1 (HP1 beta homolog Drosophila )]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

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SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 22.8 0.0228 Cb medulloblastoma TGTTAAGATG (2) 2.3 0.0023 P8 GC+1d culture ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 19.4 0.0194 P8 GC+SHH+1d culture ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 22.3 0.0223 3T3 fibroblasts ATTCAAGACA (2) 3.5 0.0035 E15 cortex AGACAGATAA (4) ATTCAAGACA (2) TGTTAAGATG (2) 19.7 0.0197 P1 cortex AGACAGATAA (4) 4.5 0.0045 Hypothalamus AGACAGATAA (4) TGTGTAGTTT (2) TGTTAAGATG (2) 7.2 0.0072 E12.5 retina AGACAGATAA (4) ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) TTCCTGATGA (3) 18.9 0.0189 E14.5 retina ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) TTCCTGATGA (3) 43.7 0.0437 E16.5 retina ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 38 0.038 E18.5 retina AGACAGATAA (4) ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 36.3 0.0363 P0.5 retina ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 33.3 0.0333 P2.5 retina ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) TTCCTGATGA (3) 22.9 0.0229 P4.5 retina ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 13.8 0.0138 P6.5 retina TGTGTAGTTT (2) TGTTAAGATG (2) 8.4 0.0084 P10.5 crx- retina ATTCAAGACA (2) TGTGTAGTTT (2) TGTTAAGATG (2) 26.1 0.0261 P10.5 crx+ retina ATTCAAGACA (2) TGTTAAGATG (2) 7.7 0.0077 Adult retinal TGTGTAGTTT (2) TGTTAAGATG (2) TTCCTGATGA (3) 5.7 0.0057 ONL TGTGTAGTTT (2) 3.8 0.0038