Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.290791	Ndufs1	NADH dehydrogenase (ubiquinone) Fe-S protein 1	1		227197
Gene Ontology	electron carrier activity | electron transport | electron transporter activity | iron ion binding | mitochondrial electron transport, NADH to ubiquinone | mitochondrion | mitochondrion | NADH dehydrogenase (ubiquinone) activity | NADH dehydrogenase activity | oxidoreductase activity | oxidoreductase activity, acting on NADH or NADPH | respiratory chain complex I (sensu Eukarya)
Human Homolog	NDUFS1[NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 132 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC CAAATCCCCC (2) 1.6 0.0016 P8 Cb GC TTGGAAAAAA (8) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma GGAAGGTGGG (11) 2.3 0.0023 Cb medulloblastoma TTAAAAACAC (2) 2.3 0.0023 Cb medulloblastoma TTAAAAAGAA (11) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture AAAGAGAAAA (11) 2.3 0.0023 P8 GC+1d culture CAAATCCCCC (2) 2.3 0.0023 P8 GC+1d culture TTAAAAACAC (2) 2.3 0.0023 P8 GC+1d culture TTGGAAAAAA (8) 2.3 0.0023 P8 GC+1d culture AAGGATTTAA (3) 1.1 0.0011 P8 GC+1d culture AGTCTGAATG (3) 1.1 0.0011 P8 GC+1d culture CTGTCTGGTT (5) 1.1 0.0011 P8 GC+1d culture TACATAAATA 1.1 0.0011 P8 GC+1d culture TTAAAAACAA (8) 1.1 0.0011 P8 GC+1d culture TTAAAAAGAA (11) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture TTAAAAACAA (8) 3.5 0.0035 P8 GC+SHH+1d culture TTGGAAAAAA (8) 3.5 0.0035 P8 GC+SHH+1d culture CAAATCCCCC (2) 1.2 0.0012 P8 GC+SHH+1d culture TACATAAATA 1.2 0.0012 P8 GC+SHH+1d culture TTAAAAAGAA (11) 1.2 0.0012 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 E15 cortex GGAAGGTGGG (11) 9.9 0.0099 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex CAAATCCCCC (2) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex CTGTCTGGTT (5) 4.5 0.0045 P1 cortex TTGGAAAAAA (8) 4.5 0.0045 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus GGAAGGTGGG (11) 7.2 0.0072 Hypothalamus AGTCTGAATG (3) 3.6 0.0036 Hypothalamus TACATAAATA 1.8 0.0018 Hypothalamus TTAAAAACAA (8) 1.8 0.0018 Hypothalamus TTTAAAAACA (3) 1.8 0.0018 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina TACATAAATA 5.6 0.0056 E12.5 retina GGAAGGTGGG (11) 1.9 0.0019 E12.5 retina TTAAAAACAC (2) 1.9 0.0019 E12.5 retina TTGGAAAAAA (8) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina TACATAAATA 5.5 0.0055 E14.5 retina CAAATCCCCC (2) 3.6 0.0036 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina CAAATCCCCC (2) 5.4 0.0054 E16.5 retina AGTCTGAATG (3) 3.6 0.0036 E16.5 retina GGAAGGTGGG (11) 3.6 0.0036 E16.5 retina TACATAAATA 3.6 0.0036 E16.5 retina CTGTCTGGTT (5) 1.8 0.0018 E16.5 retina TTAAAAACAA (8) 1.8 0.0018 E16.5 retina TTAAAAACAC (2) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina TTAAAAACAC (2) 9.1 0.0091 E18.5 retina TTGGAAAAAA (8) 9.1 0.0091 E18.5 retina TACATAAATA 7.3 0.0073 E18.5 retina CTGTCTGGTT (5) 3.6 0.0036 E18.5 retina AAAGAGAAAA (11) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina CAAATCCCCC (2) 5.9 0.0059 P0.5 retina GGAAGGTGGG (11) 3.9 0.0039 P0.5 retina CTGTCTGGTT (5) 2 0.002 P0.5 retina TTAAAAACAC (2) 2 0.002 P0.5 retina TTTAAAAACA (3) 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina GGAAGGTGGG (11) 7 0.007 P2.5 retina CAAATCCCCC (2) 5.3 0.0053 P2.5 retina TTGGAAAAAA (8) 3.5 0.0035 P2.5 retina TTAAAAACAA (8) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina CAAATCCCCC (2) 17.8 0.0178 P4.5 retina GGAAGGTGGG (11) 15.9 0.0159 P4.5 retina TTAAAAACAC (2) 5.9 0.0059 P4.5 retina AGTCTGAATG (3) 2 0.002 P4.5 retina TACATAAATA 2 0.002 P4.5 retina TGGGAAAACA (5) 2 0.002 P4.5 retina TTAAAAACAA (8) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina GGAAGGTGGG (11) 5 0.005 P6.5 retina TTGGAAAAAA (8) 5 0.005 P6.5 retina AAGGATTTAA (3) 3.3 0.0033 P6.5 retina TTGTAAGTTT 3.3 0.0033 P6.5 retina CAAATCCCCC (2) 1.7 0.0017 P6.5 retina TGGGAAAACA (5) 1.7 0.0017 P6.5 retina TTAAAAACAC (2) 1.7 0.0017 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina CAAATCCCCC (2) 7.4 0.0074 P10.5 crx- retina GGAAGGTGGG (11) 3.7 0.0037 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina TTAAAAACAC (2) 3.8 0.0038 P10.5 crx+ retina AAAGAGAAAA (11) 1.9 0.0019 P10.5 crx+ retina CAAATCCCCC (2) 1.9 0.0019 P10.5 crx+ retina CTGTCTGGTT (5) 1.9 0.0019 P10.5 crx+ retina GGAAGGTGGG (11) 1.9 0.0019 P10.5 crx+ retina TGGGAAAACA (5) 1.9 0.0019 P10.5 crx+ retina TTAAAAACAA (8) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal CAAATCCCCC (2) 5.6 0.0056 Adult retinal CTGTCTGGTT (5) 5.6 0.0056 Adult retinal AAAGAGAAAA (11) 3.7 0.0037 Adult retinal TTAAAAACAA (8) 1.9 0.0019 Adult retinal TTGGAAAAAA (8) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL CAAATCCCCC (2) 1.9 0.0019 ONL GGAAGGTGGG (11) 1.9 0.0019 ONL TACATAAATA 1.9 0.0019 ONL TGGGAAAACA (5) 1.9 0.0019 ONL TTAAAAACAA (8) 1.9 0.0019 ONL TTAAAAACAC (2) 1.9 0.0019 ONL TTGGAAAAAA (8) 1.9 0.0019 ONL TTGTAAGTTT 1.9 0.0019 ONL TTTAAAAACA (3) 1.9 0.0019