Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291005	A930035E12Rik	RIKEN cDNA A930035E12 gene	12		77966
Mm.291005	4933401A11Rik	RIKEN cDNA 4933401A11 gene	12		74433
Mm.291005	6430597G12Rik	RIKEN cDNA 6430597G12 gene	12		76210
Mm.291005	B230375D24Rik	RIKEN cDNA B230375D24 gene	12		319992
Mm.291005	A730073F16Rik	RIKEN cDNA A730073F16 gene	12		319484
Mm.291005	E530011G23Rik	RIKEN cDNA E530011G23 gene	12		319856
Mm.291005	Nrxn3	neurexin III	12	12 45.0 cM	18191
Gene Ontology	calcium channel regulator activity | neurotransmitter secretion | presynaptic membrane | synaptic transmission | synaptogenesis
Human Homolog	NRXN3[neurexin 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 76 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC AAAAGAAAAA (21) 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma AAAAGAAAAA (21) 11.6 0.0116 Cb medulloblastoma CAAACAAAGA (8) 4.6 0.0046 Cb medulloblastoma CATTTCACAG (9) 4.6 0.0046 Cb medulloblastoma ACCTTGGAAG (12) 2.3 0.0023 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture GCCAAGTGTG (8) 2.3 0.0023 P8 GC+1d culture GTAGATTTTG (7) 2.3 0.0023 P8 GC+1d culture AAAAGAAAAA (21) 1.1 0.0011 P8 GC+1d culture ACCTTGGAAG (12) 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture AAAAGAAAAA (21) 3.5 0.0035 P8 GC+SHH+1d culture ACCTTGGAAG (12) 2.3 0.0023 P8 GC+SHH+1d culture CAAACAAAGA (8) 1.2 0.0012 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex CAAACAAAGA (8) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus CAAACAAAGA (8) 3.6 0.0036 Hypothalamus CATTTCACAG (9) 1.8 0.0018 Hypothalamus GCCAAGTGTG (8) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina AAAAGAAAAA (21) 5.5 0.0055 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina ACCTTGGAAG (12) 2 0.002 P0.5 retina CAAACAAAGA (8) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CAAACAAAGA (8) 7 0.007 P2.5 retina AAAAGAAAAA (21) 3.5 0.0035 P2.5 retina AAGGAGAAGC (10) 1.8 0.0018 P2.5 retina GTAGATTTTG (7) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina AAAAGAAAAA (21) 9.9 0.0099 P4.5 retina CAAACAAAGA (8) 2 0.002 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina ACCTTGGAAG (12) 3.3 0.0033 P6.5 retina CAAACAAAGA (8) 3.3 0.0033 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina ACCTTGGAAG (12) 5.6 0.0056 P10.5 crx- retina CATTTCACAG (9) 3.7 0.0037 P10.5 crx- retina AAAAGAAAAA (21) 1.9 0.0019 P10.5 crx- retina AAGGAGAAGC (10) 1.9 0.0019 P10.5 crx- retina GTAGATTTTG (7) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina ACCTTGGAAG (12) 5.8 0.0058 P10.5 crx+ retina AAAAGAAAAA (21) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal ACCTTGGAAG (12) 3.7 0.0037 Adult retinal AAAAGAAAAA (21) 1.9 0.0019 Adult retinal CAAACAAAGA (8) 1.9 0.0019 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL AAAAGAAAAA (21) 5.7 0.0057