Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291442	Sparc	secreted acidic cysteine rich glycoprotein	11	11 B1 (11 29.9 cM)	20692
Gene Ontology	basement membrane | calcium ion binding | extracellular matrix | extracellular space
Human Homolog	SPARC[secreted protein, acidic, cysteine-rich (osteonectin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 7 In Situ Hybridization Images

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SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAACTCTCA 24.5 0.0245 P8 Cb GC CGTGACTGGC (2) 6.5 0.0065 P8 Cb GC GAACATTGCA (2) 6.5 0.0065 P8 Cb GC GGTGGGCCAG 3.3 0.0033 P8 Cb GC CAAAATTTCA (2) 1.6 0.0016 P8 Cb GC GAAGTTTGGC 1.6 0.0016 Cb medulloblastoma CAAACTCTCA 117.9 0.1179 Cb medulloblastoma CTAGAAACTT 6.9 0.0069 Cb medulloblastoma GAACATTGCA (2) 6.9 0.0069 Cb medulloblastoma GCAAGGTGTG 4.6 0.0046 Cb medulloblastoma GGGATGAGGG 4.6 0.0046 Cb medulloblastoma CAAACTTTCA 2.3 0.0023 Cb medulloblastoma GGTGGGGCAG (3) 2.3 0.0023 Cb medulloblastoma TTCCCCCTCA 2.3 0.0023 P8 GC+1d culture CAAACTCTCA 41.1 0.0411 P8 GC+1d culture GAACATTGCA (2) 10.3 0.0103 P8 GC+1d culture CAAAATTTCA (2) 1.1 0.0011 P8 GC+1d culture CTAGAAACTT 1.1 0.0011 P8 GC+1d culture GGTGGGCCAG 1.1 0.0011 P8 GC+1d culture TTCCCCCTCA 1.1 0.0011 P8 GC+SHH+1d culture CAAACTCTCA 37.5 0.0375 P8 GC+SHH+1d culture GAACATTGCA (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCTCAGAGT 2.3 0.0023 P8 GC+SHH+1d culture CTAGAAACTT 1.2 0.0012 P8 GC+SHH+1d culture GGTGGGCCAG 1.2 0.0012 3T3 fibroblasts GAACATTGCA (2) 217.3 0.2173 3T3 fibroblasts CAAACTCTCA 133.2 0.1332 3T3 fibroblasts GGTGGGCCAG 3.5 0.0035 E15 cortex CAAACTCTCA 19.8 0.0198 P1 cortex CAAACTCTCA 18.2 0.0182 P1 cortex GAACATTGCA (2) 18.2 0.0182 Hypothalamus CAAACTCTCA 233.6 0.2336 Hypothalamus AAATGCTTGG 16.3 0.0163 Hypothalamus GAACATTGCA (2) 14.5 0.0145 Hypothalamus GCCTCAGAGT 14.5 0.0145 Hypothalamus GGTGGGCCAG 9.1 0.0091 Hypothalamus CTAGAAACTT 7.2 0.0072 Hypothalamus TTCCCCCTCA 7.2 0.0072 Hypothalamus GGGATGAGGG 5.4 0.0054 Hypothalamus CAAAATTTCA (2) 3.6 0.0036 Hypothalamus CGTGACTGGC (2) 1.8 0.0018 Hypothalamus GCAAGGTGTG 1.8 0.0018 Hypothalamus GGTGGGGCAG (3) 1.8 0.0018 E12.5 retina CAAACTCTCA 63.8 0.0638 E12.5 retina CGTGACTGGC (2) 3.8 0.0038 E12.5 retina GAACATTGCA (2) 3.8 0.0038 E12.5 retina AGAACGAGGA 1.9 0.0019 E12.5 retina GGTGGGCCAG 1.9 0.0019 E14.5 retina CAAACTCTCA 18.2 0.0182 E14.5 retina GAACATTGCA (2) 3.6 0.0036 E14.5 retina CAAAATTTCA (2) 1.8 0.0018 E14.5 retina CTAGAAACTT 1.8 0.0018 E14.5 retina GCCTCAGAGT 1.8 0.0018 E14.5 retina GGGATGAGGG 1.8 0.0018 E14.5 retina GGTGGGCCAG 1.8 0.0018 E16.5 retina CAAACTCTCA 21.7 0.0217 E16.5 retina GGGATGAGGG 3.6 0.0036 E16.5 retina CAAAATTTCA (2) 1.8 0.0018 E16.5 retina GAACATTGCA (2) 1.8 0.0018 E16.5 retina TTCCCCCTCA 1.8 0.0018 E18.5 retina CAAACTCTCA 10.9 0.0109 E18.5 retina CAAAATTTCA (2) 7.3 0.0073 E18.5 retina GAAGTTTGGC 3.6 0.0036 E18.5 retina GCCTCAGAGT 1.8 0.0018 E18.5 retina GGGATGAGGG 1.8 0.0018 P0.5 retina CAAACTCTCA 9.8 0.0098 P0.5 retina GAACATTGCA (2) 3.9 0.0039 P2.5 retina CAAACTCTCA 22.9 0.0229 P2.5 retina GAACATTGCA (2) 1.8 0.0018 P2.5 retina GCCTCAGAGT 1.8 0.0018 P4.5 retina CAAACTCTCA 39.6 0.0396 P4.5 retina GAACATTGCA (2) 5.9 0.0059 P4.5 retina GCCTCAGAGT 4 0.004 P4.5 retina CAAAATTTCA (2) 2 0.002 P4.5 retina GAAGTTTGGC 2 0.002 P4.5 retina GGTGGGCCAG 2 0.002 P6.5 retina CAAACTCTCA 58.4 0.0584 P6.5 retina GAACATTGCA (2) 11.7 0.0117 P6.5 retina CAAAATTTCA (2) 3.3 0.0033 P6.5 retina CTAGAAACTT 1.7 0.0017 P6.5 retina GCCTCAGAGT 1.7 0.0017 P10.5 crx- retina CAAACTCTCA 83.6 0.0836 P10.5 crx- retina GAACATTGCA (2) 7.4 0.0074 P10.5 crx- retina CGTGACTGGC (2) 3.7 0.0037 P10.5 crx- retina CAAAATTTCA (2) 1.9 0.0019 P10.5 crx- retina CAAACTTTCA 1.9 0.0019 P10.5 crx- retina TTCCCCCTCA 1.9 0.0019 P10.5 crx+ retina CAAACTCTCA 115.3 0.1153 P10.5 crx+ retina GAACATTGCA (2) 5.8 0.0058 P10.5 crx+ retina CAAAATTTCA (2) 3.8 0.0038 P10.5 crx+ retina CAAACTTTCA 1.9 0.0019 P10.5 crx+ retina CGTGACTGGC (2) 1.9 0.0019 P10.5 crx+ retina CTAGAAACTT 1.9 0.0019 Adult retinal CAAACTCTCA 18.5 0.0185 Adult retinal GAACATTGCA (2) 5.6 0.0056 Adult retinal CAAAATTTCA (2) 1.9 0.0019 Adult retinal CTAGAAACTT 1.9 0.0019 Adult retinal GAAGTTTGGC 1.9 0.0019 Adult retinal GGTGGGGCAG (3) 1.9 0.0019 ONL AGAACGAGGA 3.8 0.0038 ONL CAAACTCTCA 3.8 0.0038 ONL GAACATTGCA (2) 1.9 0.0019