Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291533	Hps3	Hermansky-Pudlak syndrome 3 homolog (human)	3	3 12.5 cM	12807
Gene Ontology	cytoplasm | organelle organization and biogenesis
Human Homolog	HPS3[Hermansky-Pudlak syndrome 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC CTGAGAGAAA (4) 3.3 0.0033 P8 Cb GC ACTTGTTTAC 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma ATTTTCAAAA (5) 4.6 0.0046 Cb medulloblastoma ACCTGTGCTG (2) 2.3 0.0023 Cb medulloblastoma ACTTGTTTAC 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture GTGATGCACA (8) 2.3 0.0023 P8 GC+1d culture ATTTTCAAAA (5) 1.1 0.0011 P8 GC+1d culture GGGAACCCCT (9) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture ATTTTCAAAA (5) 8.2 0.0082 P8 GC+SHH+1d culture CTGAGAGAAA (4) 1.2 0.0012 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts CTGAGAGAAA (4) 3.5 0.0035 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex AGAACTTAAA (8) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex GGGAACCCCT (9) 9.1 0.0091 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus ACCTGTGCTG (2) 1.8 0.0018 Hypothalamus ATTTTCAAAA (5) 1.8 0.0018 Hypothalamus CAAAACTCTG (5) 1.8 0.0018 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina ACTTGTTTAC 1.9 0.0019 E12.5 retina GGGAACCCCT (9) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina ACTTGTTTAC 1.8 0.0018 E14.5 retina AGAACTTAAA (8) 1.8 0.0018 E14.5 retina ATTTTCAAAA (5) 1.8 0.0018 E14.5 retina GGGAACCCCT (9) 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina GGGAACCCCT (9) 5.4 0.0054 E16.5 retina AGAACTTAAA (8) 3.6 0.0036 E16.5 retina ATTTTCAAAA (5) 3.6 0.0036 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina ACTTGTTTAC 3.6 0.0036 E18.5 retina GGGAACCCCT (9) 3.6 0.0036 E18.5 retina CAAAACTCTG (5) 1.8 0.0018 E18.5 retina TTAACAGCCA (2) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina GGGAACCCCT (9) 11.8 0.0118 P0.5 retina ATTTTCAAAA (5) 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina ATTTTCAAAA (5) 5.3 0.0053 P2.5 retina GGGAACCCCT (9) 3.5 0.0035 P2.5 retina CAAAACTCTG (5) 1.8 0.0018 P2.5 retina GTGATGCACA (8) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina ATTTTCAAAA (5) 5.9 0.0059 P4.5 retina GGGAACCCCT (9) 4 0.004 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina ACTTGTTTAC 1.7 0.0017 P6.5 retina ATTTTCAAAA (5) 1.7 0.0017 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina ACTTGTTTAC 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina ACTTGTTTAC 3.8 0.0038 P10.5 crx+ retina GGGAACCCCT (9) 1.9 0.0019 P10.5 crx+ retina GTGATGCACA (8) 1.9 0.0019 P10.5 crx+ retina TTAACAGCCA (2) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal ACCTGTGCTG (2) 1.9 0.0019 Adult retinal GGGAACCCCT (9) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL ATTTTCAAAA (5) 3.8 0.0038 ONL ACTTGTTTAC 1.9 0.0019 ONL TTAACAGCCA (2) 1.9 0.0019