| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | TTTTCTATTT (2)
| 3.3 | 0.0033 |
| P8 GC+1d culture | TTTTCTATTT (2) TTTTTTCACA (2)
| 5.7 | 0.0057 |
| P8 GC+SHH+1d culture | AAAACATTAA (2) TTTTCTATTT (2) TTTTTTCACA (2)
| 5.9 | 0.0059 |
| E15 cortex | AAAACATTAA (2)
| 4.9 | 0.0049 |
| P1 cortex | TTTTCTATTT (2)
| 4.5 | 0.0045 |
| Hypothalamus | TTTTTTCACA (2)
| 5.4 | 0.0054 |
| E12.5 retina | AAAACATTAA (2) TTTTCTATTT (2) TTTTTTCACA (2)
| 11.3 | 0.0113 |
| E16.5 retina | TTTTCTATTT (2)
| 5.4 | 0.0054 |
| E18.5 retina | AAAACATTAA (2) TTTTCTATTT (2)
| 5.4 | 0.0054 |
| P0.5 retina | TTTTCTATTT (2) TTTTTTCACA (2)
| 5.9 | 0.0059 |
| P2.5 retina | TTTTCTATTT (2)
| 1.8 | 0.0018 |
| P4.5 retina | TTTTCTATTT (2) TTTTTTCACA (2)
| 6 | 0.006 |
| P6.5 retina | TTTTCTATTT (2) TTTTTTCACA (2)
| 6.7 | 0.0067 |
| P10.5 crx- retina | TTTTCTATTT (2) TTTTTTCACA (2)
| 7.4 | 0.0074 |
| P10.5 crx+ retina | AAAACATTAA (2)
| 1.9 | 0.0019 |
| Adult retinal | AAAACATTAA (2) TTTTTTCACA (2)
| 3.8 | 0.0038 |
| ONL | TTTTTTCACA (2)
| 1.9 | 0.0019 |