Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291928	Catnb	catenin beta	9	9 F4 (9 72.0 cM)	12387
Gene Ontology	adherens junction | alpha-catenin binding | apical part of cell | basolateral plasma membrane | cadherin binding | cell adhesion | cell growth and/or maintenance | cell-cell adherens junction | cytoplasm | cytoskeleton | DNA binding | ectoderm development | gastrulation (sensu Mammalia) | heart development | hemopoiesis | intercellular junction | lamellipodium | lung development | membrane | membrane fraction | nucleus | patterning of blood vessels | protein binding | proximal/distal pattern formation | regulation of cell differentiation | regulation of cell proliferation | regulation of transcription | regulation of transcription, DNA-dependent | structural molecule activity | synapse organization and biogenesis | synaptic transmission | transcription | transcription coactivator activity | transcription factor activity | transcription factor complex | Wnt receptor signaling pathway
Human Homolog	CTNNB1[catenin (cadherin-associated protein), beta 1, 88kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 13 In Situ Hybridization Images

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SAGE Tags

Total 169 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (2) AAAATATCCA AAATAGATCC AAGATGCACA (2) AGGTCCTGGG CCTGTCATCC (2) CTTGCTCGGG (2) GATGGCTGCC GATGGGCTGC GCCAACTCCA TGGTGATATT TTTTTGAACA 241.3 0.2413 Cb medulloblastoma AAAAAAAAAA (2) AAATAAATCT AAATAGATCC AAGATGCACA (2) CAAAAACAAA TGCCAGGAGA (2) TGGTGATATT TTTTTGAACA 823.2 0.8232 P8 GC+1d culture AAAAAAAAAA (2) AAATAAATCT AAATATATGC AAGATGCACA (2) CCTGTCATCC (2) CTTGCTCGGG (2) GAATTTCAAG GATGGCTGCC GCCTCTGATA (2) TCTGTCTGTC (3) TGCCAGGAGA (2) TGGTGATATT TGTGGAAGTT (2) TTTTTGAACA 247.5 0.2475 P8 GC+SHH+1d culture AAAAAAAAAA (2) AAATAAATCT AAATAGATCA AAATAGATCC AAGATGCACA (2) CAAAAACAAA CCTGTCATCC (2) GAATTTCAAG GATGGCTGCC TGAAAAAAGA (2) TGGTGATATT TGTGGAAGTT (2) TTCAACTCCA (2) TTTTTGAACA 318.5 0.3185 3T3 fibroblasts AAAAAAAAAA (2) AAATAGATCC TTTTTGAACA 35 0.035 E15 cortex AAAAAAAAAA (2) GATGGGCTGC TGAAAAAAGA (2) 222.6 0.2226 P1 cortex AAAAAAAAAA (2) AAAATATCCA TTTTTGAACA 259 0.259 Hypothalamus AAAAAAAAAA (2) AAAATATCCA AAATAGATCC AAATATATGC CTTGCTCGGG (2) GATGGCTGCC GGTTGGGGGG TGTGGAAGTT (2) TTTTTGAACA 152.1 0.1521 E12.5 retina AAAAAAAAAA (2) AAATAGATCC CAAAAACAAA CTTGCTCGGG (2) TGGTGATATT TTTTTGAACA 189.7 0.1897 E14.5 retina AAAAAAAAAA (2) AAATAAATCT AAATAGATCC CCTGTCATCC (2) GATGGCTGCC GCCAACTCCA GCTCGAAAGG TGGTGATATT TTTTTGAACA 131 0.131 E16.5 retina AAAAAAAAAA (2) AAATAAATCT AAATAGATCC GATGGCTGCC GATGGGCTGC GCTCGAAAGG TGGTGATATT TGTGGAAGTT (2) TTTTTGAACA 72.4 0.0724 E18.5 retina AAAAAAAAAA (2) AAATAAATCT AAATAGATCC GATGGCTGCC GATGGGCTGC GCCAACTCCA TGATGATCAA TGGTGATATT TTTTTGAACA 405.6 0.4056 P0.5 retina AAAAAAAAAA (2) AAATAGATCC GAATTTCAAG GATGGCTGCC TCTGTCTGTC (3) TGGTGATATT TGTGGAAGTT (2) TTTTTGAACA 159.2 0.1592 P2.5 retina AAAAAAAAAA (2) AAATAAATCT AAATAGATCA AAATAGATCC CCTGTCATCC (2) GAATTTCAAG GATGGCTGCC GGTTGGGGGG TCTGTCTGTC (3) TGCCAGGAGA (2) TGGTGATATT TTTTTGAACA 380.4 0.3804 P4.5 retina AAAAAAAAAA (2) AAATAAATCT AAATAGATCA AAATAGATCC CTTGCTCGGG (2) GATGGCTGCC GCTCGAAAGG TTCAACTCCA (2) TTTTTGAACA 315 0.315 P6.5 retina AAAAAAAAAA (2) AAATAAATCT AAATAGATCC AGGTCCTGGG GATGGCTGCC TCTGTCTGTC (3) TTTTTGAACA 290.2 0.2902 P10.5 crx- retina AAAAAAAAAA (2) AAAATATCCA CCTGTCATCC (2) GCCTCTGATA (2) TGATGATCAA TGGTGATATT TTCAACTCCA (2) TTTTTGAACA 80 0.08 P10.5 crx+ retina AAAAAAAAAA (2) AAAATATCCA AAATAGATCC CCTGTCATCC (2) GATGGCTGCC TCTGTCTGTC (3) TGGTGATATT TGTGGAAGTT (2) TTTTTGAACA 132.5 0.1325 Adult retinal AAAAAAAAAA (2) AAAATATCCA AAGATGCACA (2) AGGTCCTGGG CTTGCTCGGG (2) GCCTCTGATA (2) TCTGTCTGTC (3) TGCCAGGAGA (2) TGGTGATATT TTTTTGAACA 83.7 0.0837 ONL AAAAAAAAAA (2) AAATAAATCT GAATTTCAAG GATGGCTGCC TGTGGAAGTT (2) TTCAACTCCA (2) TTTTTGAACA 118.6 0.1186