Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29210	Vat1	vesicle amine transport protein 1 homolog (T californica)	11		26949
Gene Ontology	alcohol dehydrogenase activity, zinc-dependent | NADPH:quinone reductase activity | oxidoreductase activity | zinc ion binding
Human Homolog	VAT1[vesicle amine transport protein 1 homolog (T californica)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGGCCTCAA (2) GAGGCTCAAT TCACGATGCT (2) TGGGAAGTGT (2) 8.1 0.0081 Cb medulloblastoma GAGGCCTCAA (2) GCCGCACTGG GGGGAAATGG TGGGAAGTGT (2) TGGGAGTGTG 18.4 0.0184 P8 GC+1d culture ATGTCATCAA (2) GAGGCCTCAA (2) TGGGAAGTGT (2) 36.5 0.0365 P8 GC+SHH+1d culture ATGTCATCAA (2) GAGGCTCAAT GCCCGCACCT GCCGCACTGG TGGGAAGTGT (2) 24.7 0.0247 3T3 fibroblasts TGGGAAGTGT (2) 10.5 0.0105 E15 cortex ATGTCATCAA (2) GCCCGCACCT TGGGAAGTGT (2) 19.7 0.0197 P1 cortex ATGTCATCAA (2) GAGGCCTCAA (2) GGGGAAATGG TGGGAAGTGT (2) 36.3 0.0363 Hypothalamus ATGTCATCAA (2) GAGGCCTCAA (2) GCCCGCACCT GCCGCACTGG TCACGATGCT (2) TGGGAAGTGT (2) 19.8 0.0198 E12.5 retina ATGTCATCAA (2) GAGGCCTCAA (2) TGGGAAGTGT (2) 24.5 0.0245 E14.5 retina ATGTCATCAA (2) TGGAAGTGTA TGGGAAGTGT (2) 21.9 0.0219 E16.5 retina ATGTCATCAA (2) GAGGCCTCAA (2) GCCGCACTGG TGGAAGTGTA TGGGAAGTGT (2) 21.7 0.0217 E18.5 retina ATGTCATCAA (2) GCCAGCCCTG GCCCGCACCT TGGGAAGTGT (2) 18.2 0.0182 P0.5 retina ATGTCATCAA (2) TGGAAGTGTA TGGGAAGTGT (2) 13.8 0.0138 P2.5 retina GAGGCCTCAA (2) GCCAGCCCTG GGGGAAATGG TGGGAAGTGT (2) 10.7 0.0107 P4.5 retina ATGTCATCAA (2) TGGAAGTGTA 6 0.006 P6.5 retina ATGTCATCAA (2) GAGGCCTCAA (2) GAGGCTCAAT 10 0.01 P10.5 crx- retina ATGTCATCAA (2) GAGGCCTCAA (2) GCCAGCCCTG GGGGAAATGG TGGGAAGTGT (2) 16.8 0.0168 P10.5 crx+ retina GAGGCCTCAA (2) TCACGATGCT (2) TGGGAAGTGT (2) 7.6 0.0076 Adult retinal ATGTCATCAA (2) GAGGCCTCAA (2) TGGAAGTGTA TGGGAAGTGT (2) 26 0.026 ONL ATGTCATCAA (2) 9.6 0.0096