Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.292729	Traf6	Tnf receptor-associated factor 6	2		22034
Gene Ontology	antigen presentation, exogenous antigen via MHC class II | dendritic cell differentiation | odontogenesis (sensu Vertebrata) | ossification | positive regulation of interleukin-12 biosynthesis | positive regulation of interleukin-6 biosynthesis | protein binding | protein ubiquitination | receptor activity | signal transducer activity | signal transduction | T-helper 1 type immune response | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	TRAF6[TNF receptor-associated factor 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 26 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGACTGGAAA (2) 4.9 0.0049 P8 Cb GC AAAATCACCA (3) 1.6 0.0016 Cb medulloblastoma TGGCCACAGG (3) 4.6 0.0046 Cb medulloblastoma CCTGGCCCCA 2.3 0.0023 Cb medulloblastoma TGACTGGAAA (2) 2.3 0.0023 P8 GC+1d culture TGGCCACAGG (3) 2.3 0.0023 P8 GC+1d culture TGACTGGAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture TGACTGGAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture TGGCCACAGG (3) 1.2 0.0012 3T3 fibroblasts CCTGGCCCCA 3.5 0.0035 3T3 fibroblasts TGACTGGAAA (2) 3.5 0.0035 3T3 fibroblasts TGGCCACAGG (3) 3.5 0.0035 E15 cortex TGACTGGAAA (2) 4.9 0.0049 P1 cortex TGGCCACAGG (3) 4.5 0.0045 Hypothalamus TGGCCACAGG (3) 3.6 0.0036 E14.5 retina AAAATCACCA (3) 1.8 0.0018 E16.5 retina TGGCCACAGG (3) 1.8 0.0018 P0.5 retina TGGCCACAGG (3) 2 0.002 P2.5 retina TGACTGGAAA (2) 1.8 0.0018 P4.5 retina TGGCCACAGG (3) 4 0.004 P6.5 retina TGGCCACAGG (3) 1.7 0.0017 P10.5 crx- retina TGACTGGAAA (2) 1.9 0.0019 P10.5 crx- retina TGGCCACAGG (3) 1.9 0.0019 P10.5 crx+ retina TGGCCACAGG (3) 1.9 0.0019 Adult retinal CCTGGCCCCA 3.7 0.0037 ONL AAAATCACCA (3) 1.9 0.0019