Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.2930
Ppan
peter pan homolog (Drosophila)
9
235036
Human Homolog
PPAN[peter pan homolog (Drosophila)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 105 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTAAAAAAAA (
28
)
55.5
0.0555
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
CAGGCCCAAA (
3
)
4.9
0.0049
P8 Cb GC
GTGAAAAAAA
(
22
)
4.9
0.0049
P8 Cb GC
CCCAGCATTA
(
2
)
1.6
0.0016
P8 Cb GC
CCTGAAGATG (
10
)
1.6
0.0016
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
GTAAAAAAAA (
28
)
129.5
0.1295
Cb medulloblastoma
GTGAAAAAAA
(
22
)
43.9
0.0439
Cb medulloblastoma
CAGGCCCAAA (
3
)
18.5
0.0185
Cb medulloblastoma
GTGCAAAAAA (
3
)
4.6
0.0046
Cb medulloblastoma
CAGGCCCACA
(
2
)
2.3
0.0023
P8 GC+1d culture
GTAAAAAAAA (
28
)
74.2
0.0742
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
CAGGCCCAAA (
3
)
6.8
0.0068
P8 GC+1d culture
GTGAAAAAAA
(
22
)
6.8
0.0068
P8 GC+1d culture
TTCAGGTTTA
(
2
)
2.3
0.0023
P8 GC+1d culture
CAGGCCCACA
(
2
)
1.1
0.0011
P8 GC+1d culture
CCTGAAGATG (
10
)
1.1
0.0011
P8 GC+SHH+1d culture
GTAAAAAAAA (
28
)
132.3
0.1323
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
GTGAAAAAAA
(
22
)
10.5
0.0105
P8 GC+SHH+1d culture
CAGGCCCAAA (
3
)
7
0.007
P8 GC+SHH+1d culture
CCTGAAGATG (
10
)
2.3
0.0023
P8 GC+SHH+1d culture
CAGGCCCCAC
1.2
0.0012
3T3 fibroblasts
GTAAAAAAAA (
28
)
7
0.007
3T3 fibroblasts
CAGGCCCAAA (
3
)
3.5
0.0035
3T3 fibroblasts
CCTGAAGATG (
10
)
3.5
0.0035
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
GTAAAAAAAA (
28
)
34.6
0.0346
E15 cortex
CAGGCCCAAA (
3
)
19.8
0.0198
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
GTAAAAAAAA (
28
)
36.4
0.0364
P1 cortex
CCTGAAGATG (
10
)
4.5
0.0045
Hypothalamus
GTAAAAAAAA (
28
)
99.6
0.0996
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
GTGAAAAAAA
(
22
)
18.1
0.0181
Hypothalamus
CAGGCCCAAA (
3
)
10.9
0.0109
Hypothalamus
CCTGAAGATG (
10
)
1.8
0.0018
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
GTAAAAAAAA (
28
)
41.3
0.0413
E12.5 retina
GTGAAAAAAA
(
22
)
11.3
0.0113
E12.5 retina
CAGGCCCAAA (
3
)
1.9
0.0019
E12.5 retina
CCTGAAGATG (
10
)
1.9
0.0019
E12.5 retina
GTGCAAAAAA (
3
)
1.9
0.0019
E14.5 retina
GTAAAAAAAA (
28
)
82
0.082
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
GTGAAAAAAA
(
22
)
12.8
0.0128
E14.5 retina
CAGGCCCAAA (
3
)
1.8
0.0018
E14.5 retina
CCTGAAGATG (
10
)
1.8
0.0018
E16.5 retina
GTAAAAAAAA (
28
)
68.8
0.0688
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
CAGGCCCAAA (
3
)
5.4
0.0054
E16.5 retina
GTGAAAAAAA
(
22
)
5.4
0.0054
E16.5 retina
CAGGCCCAAC
(
4
)
1.8
0.0018
E18.5 retina
GTAAAAAAAA (
28
)
189.2
0.1892
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
GTGAAAAAAA
(
22
)
20
0.02
E18.5 retina
CAGGCCCAAA (
3
)
9.1
0.0091
P0.5 retina
GTAAAAAAAA (
28
)
51
0.051
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
GTGAAAAAAA
(
22
)
7.9
0.0079
P0.5 retina
CAGGCCCAAA (
3
)
2
0.002
P0.5 retina
CCTGAAGATG (
10
)
2
0.002
P0.5 retina
TTCAGGTTTA
(
2
)
2
0.002
P2.5 retina
GTAAAAAAAA (
28
)
103.8
0.1038
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
GTGAAAAAAA
(
22
)
10.6
0.0106
P2.5 retina
TTCAGGTTTA
(
2
)
1.8
0.0018
P4.5 retina
GTAAAAAAAA (
28
)
142.7
0.1427
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
GTGAAAAAAA
(
22
)
23.8
0.0238
P4.5 retina
CAGGCCCAAA (
3
)
5.9
0.0059
P4.5 retina
TTCAGGTTTA
(
2
)
2
0.002
P6.5 retina
GTAAAAAAAA (
28
)
66.7
0.0667
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
CAGGCCCAAA (
3
)
8.3
0.0083
P6.5 retina
GTGAAAAAAA
(
22
)
5
0.005
P6.5 retina
CCCAGCATTA
(
2
)
3.3
0.0033
P6.5 retina
CAGGCCCAAC
(
4
)
1.7
0.0017
P6.5 retina
CAGGCCCCAC
1.7
0.0017
P6.5 retina
CCTGAAGATG (
10
)
1.7
0.0017
P10.5 crx- retina
GTAAAAAAAA (
28
)
26
0.026
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
CAGGCCCAAA (
3
)
7.4
0.0074
P10.5 crx- retina
CCTGAAGATG (
10
)
5.6
0.0056
P10.5 crx- retina
GTGAAAAAAA
(
22
)
3.7
0.0037
P10.5 crx+ retina
GTAAAAAAAA (
28
)
55.8
0.0558
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
GTGAAAAAAA
(
22
)
5.8
0.0058
P10.5 crx+ retina
CAGGCCCAAA (
3
)
3.8
0.0038
P10.5 crx+ retina
CAGGCCCAAC
(
4
)
1.9
0.0019
P10.5 crx+ retina
CAGGCCCACA
(
2
)
1.9
0.0019
Adult retinal
GTAAAAAAAA (
28
)
22.2
0.0222
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
CAGGCCCAAA (
3
)
5.6
0.0056
Adult retinal
CCTGAAGATG (
10
)
3.7
0.0037
Adult retinal
GTGAAAAAAA
(
22
)
3.7
0.0037
Adult retinal
CAGGCCCACA
(
2
)
1.9
0.0019
Adult retinal
CAGGCCCCAC
1.9
0.0019
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
GTAAAAAAAA (
28
)
24.9
0.0249
ONL
GTGAAAAAAA
(
22
)
5.7
0.0057
ONL
CAGGCCCAAA (
3
)
3.8
0.0038
ONL
CCTGAAGATG (
10
)
3.8
0.0038
