Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.293517	Sdf4	stromal cell derived factor 4	4		20318
Gene Ontology	calcium ion binding | extracellular space | Golgi apparatus
Human Homolog	Cab45[calcium binding protein Cab45 precursor]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 91 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCAGGTTT (3) 17.9 0.0179 P8 Cb GC TTTCTGGATA (5) 3.3 0.0033 P8 Cb GC AGGGCCAGGA (3) 1.6 0.0016 P8 Cb GC ATGGTGGTTC (2) 1.6 0.0016 P8 Cb GC CCTGTCTACT (5) 1.6 0.0016 Cb medulloblastoma GCCCAGGTTT (3) 25.4 0.0254 Cb medulloblastoma ATGGTGGTTC (2) 13.9 0.0139 Cb medulloblastoma AGGGCCAGGA (3) 4.6 0.0046 Cb medulloblastoma CCTGTCTACT (5) 2.3 0.0023 Cb medulloblastoma GTCTGGCTGG (12) 2.3 0.0023 Cb medulloblastoma TGTCTGAGGC 2.3 0.0023 P8 GC+1d culture GCCCAGGTTT (3) 22.8 0.0228 P8 GC+1d culture CCTGTCTACT (5) 9.1 0.0091 P8 GC+1d culture AGCTTGCTGC (3) 2.3 0.0023 P8 GC+1d culture ATGGTGGTTC (2) 2.3 0.0023 P8 GC+1d culture TTTCTGGATA (5) 2.3 0.0023 P8 GC+1d culture AGGGCCAGGA (3) 1.1 0.0011 P8 GC+1d culture TGTCTGAGGC 1.1 0.0011 P8 GC+SHH+1d culture GCCCAGGTTT (3) 16.4 0.0164 P8 GC+SHH+1d culture CCTGTCTACT (5) 11.7 0.0117 P8 GC+SHH+1d culture AGGGCCAGGA (3) 2.3 0.0023 P8 GC+SHH+1d culture ATGGTGGTTC (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGTCCTTGG (6) 1.2 0.0012 3T3 fibroblasts CCTGTCTACT (5) 21 0.021 3T3 fibroblasts ATGGTGGTTC (2) 3.5 0.0035 E15 cortex CCTGTCTACT (5) 14.8 0.0148 E15 cortex GCCCAGGTTT (3) 9.9 0.0099 E15 cortex AGGGCCAGGA (3) 4.9 0.0049 E15 cortex ATGGTGGTTC (2) 4.9 0.0049 E15 cortex GTCTGGCTGG (12) 4.9 0.0049 P1 cortex CCTGTCTACT (5) 9.1 0.0091 P1 cortex GCCCAGGTTT (3) 4.5 0.0045 Hypothalamus GCCCAGGTTT (3) 16.3 0.0163 Hypothalamus GTCTGGCTGG (12) 3.6 0.0036 Hypothalamus ATGGTGGTTC (2) 1.8 0.0018 Hypothalamus CCTGTCTACT (5) 1.8 0.0018 E12.5 retina CCTGTCTACT (5) 7.5 0.0075 E12.5 retina GCCCAGGTTT (3) 7.5 0.0075 E12.5 retina AGGGCCAGGA (3) 1.9 0.0019 E12.5 retina GGGAAGGGCA (5) 1.9 0.0019 E14.5 retina GCCCAGGTTT (3) 10.9 0.0109 E14.5 retina CCTGTCTACT (5) 5.5 0.0055 E14.5 retina AGCTTGCTGC (3) 1.8 0.0018 E14.5 retina GAGTCCTTGG (6) 1.8 0.0018 E16.5 retina GCCCAGGTTT (3) 12.7 0.0127 E16.5 retina AGGGCCAGGA (3) 5.4 0.0054 E16.5 retina CCTGTCTACT (5) 5.4 0.0054 E16.5 retina GAGTCCTTGG (6) 1.8 0.0018 E18.5 retina GCCCAGGTTT (3) 18.2 0.0182 E18.5 retina GGGAAGGGCA (5) 3.6 0.0036 E18.5 retina CCTGTCTACT (5) 1.8 0.0018 E18.5 retina TTTTCTGAGA (4) 1.8 0.0018 P0.5 retina CCTGTCTACT (5) 13.7 0.0137 P0.5 retina GCCCAGGTTT (3) 5.9 0.0059 P0.5 retina AGGGCCAGGA (3) 2 0.002 P0.5 retina GAGTCCTTGG (6) 2 0.002 P0.5 retina TTTCTGGATA (5) 2 0.002 P2.5 retina GCCCAGGTTT (3) 21.1 0.0211 P2.5 retina AGGGCCAGGA (3) 8.8 0.0088 P2.5 retina TTTCTGGATA (5) 3.5 0.0035 P2.5 retina TTTTCTGAGA (4) 3.5 0.0035 P4.5 retina GCCCAGGTTT (3) 17.8 0.0178 P4.5 retina AGGGCCAGGA (3) 4 0.004 P4.5 retina CCTGTCTACT (5) 4 0.004 P4.5 retina ATGGTGGTTC (2) 2 0.002 P6.5 retina GCCCAGGTTT (3) 15 0.015 P6.5 retina AGGGCCAGGA (3) 8.3 0.0083 P6.5 retina ATGGTGGTTC (2) 1.7 0.0017 P6.5 retina TTTTCTGAGA (4) 1.7 0.0017 P10.5 crx- retina CCTGTCTACT (5) 20.4 0.0204 P10.5 crx- retina GCCCAGGTTT (3) 7.4 0.0074 P10.5 crx- retina AGGGCCAGGA (3) 3.7 0.0037 P10.5 crx- retina ATGGTGGTTC (2) 3.7 0.0037 P10.5 crx- retina TTTCTGGATA (5) 1.9 0.0019 P10.5 crx+ retina GCCCAGGTTT (3) 15.4 0.0154 P10.5 crx+ retina CCTGTCTACT (5) 5.8 0.0058 P10.5 crx+ retina GAGAAGAGCA (4) 3.8 0.0038 P10.5 crx+ retina AGCTTGCTGC (3) 1.9 0.0019 P10.5 crx+ retina ATGGTGGTTC (2) 1.9 0.0019 P10.5 crx+ retina TGTCTGAGGC 1.9 0.0019 Adult retinal AGGGCCAGGA (3) 20.4 0.0204 Adult retinal CCTGTCTACT (5) 14.8 0.0148 Adult retinal ATGGTGGTTC (2) 5.6 0.0056 Adult retinal GCCCAGGTTT (3) 5.6 0.0056 Adult retinal GAGAAGAGCA (4) 1.9 0.0019 Adult retinal GGGAAGGGCA (5) 1.9 0.0019 Adult retinal GTCTGGCTGG (12) 1.9 0.0019 ONL AGGGCCAGGA (3) 21.1 0.0211 ONL GCCCAGGTTT (3) 13.4 0.0134 ONL CCTGTCTACT (5) 3.8 0.0038 ONL ATGGTGGTTC (2) 1.9 0.0019