| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAGGACTT CAAACTGAAG (3) TGAAGCAAAA (2) TGTGGATGTC
| 11.4 | 0.0114 |
| Cb medulloblastoma | CAAACTGAAG (3) TGTGGATGTC
| 4.6 | 0.0046 |
| P8 GC+1d culture | CAAACTGAAG (3) TGTGGATGTC
| 2.2 | 0.0022 |
| P8 GC+SHH+1d culture | CAAACTGAAG (3) GGAGTTTAAC TGTGGATGTC
| 7.1 | 0.0071 |
| 3T3 fibroblasts | CAAACTGAAG (3)
| 7 | 0.007 |
| E15 cortex | CAAACTGAAG (3)
| 19.8 | 0.0198 |
| P1 cortex | AATATCCCCT CAAACTGAAG (3)
| 18.1 | 0.0181 |
| Hypothalamus | GGAGTTTAAC
| 1.8 | 0.0018 |
| E12.5 retina | CAAACTGAAG (3) TGAAGCAAAA (2) TGTGGATGTC
| 9.5 | 0.0095 |
| E14.5 retina | CAAACTGAAG (3) TGAAGCAAAA (2)
| 7.2 | 0.0072 |
| E16.5 retina | CAAACTGAAG (3) CTGTCTGTGG (2)
| 5.4 | 0.0054 |
| E18.5 retina | AATATCCCCT CAAACTGAAG (3) TGAAGCAAAA (2)
| 9.1 | 0.0091 |
| P0.5 retina | CTGTCTGTGG (2) TGTGGATGTC
| 7.9 | 0.0079 |
| P2.5 retina | AAAAGGACTT AATATCCCCT CAAACTGAAG (3) TGAAGCAAAA (2) TGTGGATGTC
| 10.7 | 0.0107 |
| P4.5 retina | CAAACTGAAG (3)
| 4 | 0.004 |
| P6.5 retina | CAAACTGAAG (3) CTGTCTGTGG (2) GGAGTTTAAC TGTGGATGTC
| 11.7 | 0.0117 |
| P10.5 crx- retina | AATATCCCCT
| 1.9 | 0.0019 |
| Adult retinal | TGTGGATGTC
| 1.9 | 0.0019 |
| ONL | AATATCCCCT TGTGGATGTC
| 13.4 | 0.0134 |