Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.29482
1110019C08Rik
RIKEN cDNA 1110019C08 gene
16
224250
Gene Ontology
integral to membrane
|
membrane
Human Homolog
C3orf4[chromosome 3 open reading frame 4]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 117 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
TAAAAAAAAA (
196
)
47.3
0.0473
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
TGATGCTACC (
2
)
4.9
0.0049
P8 Cb GC
CCAGGCCCTG (
8
)
3.3
0.0033
P8 Cb GC
AAGGGAGGCT
1.6
0.0016
P8 Cb GC
TCATTAAAAA (
8
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
TAAAAAAAAA (
196
)
106.4
0.1064
Cb medulloblastoma
TGTCCCTAAA
(
2
)
6.9
0.0069
Cb medulloblastoma
TCATTAAAAA (
8
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
TAAAAAAAAA (
196
)
66.2
0.0662
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
AAGGGAGGCT
1.1
0.0011
P8 GC+1d culture
ATTCTCTTTT
(
7
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
TAAAAAAAAA (
196
)
93.7
0.0937
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
TGATGCTACC (
2
)
3.5
0.0035
P8 GC+SHH+1d culture
AAGGGAGGCT
2.3
0.0023
P8 GC+SHH+1d culture
GAAAGGGAGG
(
8
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
GAAAGGGAGG
(
8
)
10.5
0.0105
3T3 fibroblasts
TAAAAAAAAA (
196
)
7
0.007
3T3 fibroblasts
ATTCTCTTTT
(
7
)
3.5
0.0035
3T3 fibroblasts
CCAGGCCCTG (
8
)
3.5
0.0035
3T3 fibroblasts
TGATGCTACC (
2
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
TAAAAAAAAA (
196
)
9.9
0.0099
E15 cortex
GAAAGGGAGG
(
8
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
TAAAAAAAAA (
196
)
50
0.05
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
TAAAAAAAAA (
196
)
32.6
0.0326
Hypothalamus
GAAAGGGAGG
(
8
)
3.6
0.0036
Hypothalamus
TGTCCCTAAA
(
2
)
3.6
0.0036
Hypothalamus
ATTCTCTTTT
(
7
)
1.8
0.0018
Hypothalamus
CCAGGCCCTG (
8
)
1.8
0.0018
Hypothalamus
TCATTAAAAA (
8
)
1.8
0.0018
Hypothalamus
TGATGCTACC (
2
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
TAAAAAAAAA (
196
)
24.4
0.0244
E12.5 retina
GAAAGGGAGG
(
8
)
16.9
0.0169
E12.5 retina
TGATGCTACC (
2
)
7.5
0.0075
E12.5 retina
AAGGGAGGCT
3.8
0.0038
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
TAAAAAAAAA (
196
)
41.9
0.0419
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
GAAAGGGAGG
(
8
)
10.9
0.0109
E14.5 retina
ATTCTCTTTT
(
7
)
1.8
0.0018
E14.5 retina
GCGGCCCTCC (
5
)
1.8
0.0018
E14.5 retina
TCATTAAAAA (
8
)
1.8
0.0018
E14.5 retina
TGTCCCTAAA
(
2
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
TAAAAAAAAA (
196
)
23.5
0.0235
E16.5 retina
GAAAGGGAGG
(
8
)
12.7
0.0127
E16.5 retina
TGATGCTACC (
2
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
TAAAAAAAAA (
196
)
107.3
0.1073
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
ATTCTCTTTT
(
7
)
1.8
0.0018
E18.5 retina
TGATGCTACC (
2
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
TAAAAAAAAA (
196
)
37.3
0.0373
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
GAAAGGGAGG
(
8
)
11.8
0.0118
P0.5 retina
TGATGCTACC (
2
)
3.9
0.0039
P0.5 retina
TCATTAAAAA (
8
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
TAAAAAAAAA (
196
)
72.2
0.0722
P2.5 retina
GAAAGGGAGG
(
8
)
19.4
0.0194
P2.5 retina
TGATGCTACC (
2
)
5.3
0.0053
P2.5 retina
TGTCCCTAAA
(
2
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
TAAAAAAAAA (
196
)
122.8
0.1228
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
GAAAGGGAGG
(
8
)
9.9
0.0099
P4.5 retina
TGATGCTACC (
2
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
TAAAAAAAAA (
196
)
63.4
0.0634
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
GAAAGGGAGG
(
8
)
10
0.01
P6.5 retina
TGATGCTACC (
2
)
8.3
0.0083
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
TAAAAAAAAA (
196
)
9.3
0.0093
P10.5 crx- retina
GAAAGGGAGG
(
8
)
3.7
0.0037
P10.5 crx- retina
TGTCCCTAAA
(
2
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
TAAAAAAAAA (
196
)
25
0.025
P10.5 crx+ retina
GAAAGGGAGG
(
8
)
5.8
0.0058
P10.5 crx+ retina
TGATGCTACC (
2
)
3.8
0.0038
P10.5 crx+ retina
AAGGGAGGCT
1.9
0.0019
P10.5 crx+ retina
TGTCCCTAAA
(
2
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
TAAAAAAAAA (
196
)
18.5
0.0185
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
GAAAGGGAGG
(
8
)
5.6
0.0056
Adult retinal
AAGGGAGGCT
1.9
0.0019
Adult retinal
GCGGCCCTCC (
5
)
1.9
0.0019
Adult retinal
TGTCCCTAAA
(
2
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
TAAAAAAAAA (
196
)
28.7
0.0287
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
TGATGCTACC (
2
)
5.7
0.0057
ONL
TGTCCCTAAA
(
2
)
3.8
0.0038
ONL
GAAAGGGAGG
(
8
)
1.9
0.0019
ONL
GCGGCCCTCC (
5
)
1.9
0.0019
