Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.295565
Eml4
echinoderm microtubule associated protein like 4
17
17 E4
78798
Mm.295565
F830004D09Rik
RIKEN cDNA F830004D09 gene
17
320199
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 6 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 70 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TTTTTTTTTT (
433
)
4.9
0.0049
P8 Cb GC
GCAGAAAATT
(
2
)
3.3
0.0033
P8 Cb GC
TGTTAGTAGT
(
2
)
3.3
0.0033
P8 Cb GC
GCAACCCCAA
(
2
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
GCAGAAAATT
(
2
)
4.6
0.0046
Cb medulloblastoma
ATCCTCTTGG
(
8
)
2.3
0.0023
Cb medulloblastoma
TTTTTTTTTT (
433
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TTTTTTTTTT (
433
)
13.7
0.0137
P8 GC+1d culture
GCAGAAAATT
(
2
)
3.4
0.0034
P8 GC+1d culture
ATGTAGTTAT (
3
)
1.1
0.0011
P8 GC+1d culture
TGTTAGTAGT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
GCAGAAAATT
(
2
)
9.4
0.0094
P8 GC+SHH+1d culture
TTTTTTTTTT (
433
)
5.9
0.0059
P8 GC+SHH+1d culture
ATGTAGTTAT (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GCAACCCCAA
(
2
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
ATCCTCTTGG
(
8
)
3.5
0.0035
3T3 fibroblasts
GGCAAGGGTC (
6
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
GCAGAAAATT
(
2
)
14.8
0.0148
E15 cortex
TTTTTTTTTT (
433
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
ATCCTCTTGG
(
8
)
4.5
0.0045
P1 cortex
GGCAAGGGTC (
6
)
4.5
0.0045
P1 cortex
TTTTTTTTTT (
433
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TTTTTTTTTT (
433
)
7.2
0.0072
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
TTTTTTTTTT (
433
)
7.5
0.0075
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TTTTTTTTTT (
433
)
23.7
0.0237
E14.5 retina
GCAGAAAATT
(
2
)
5.5
0.0055
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TTTTTTTTTT (
433
)
5.4
0.0054
E16.5 retina
GCAGAAAATT
(
2
)
3.6
0.0036
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
GCAGAAAATT
(
2
)
16.4
0.0164
E18.5 retina
TTTTTTTTTT (
433
)
10.9
0.0109
E18.5 retina
GCAACCCCAA
(
2
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
TTTTTTTTTT (
433
)
9.8
0.0098
P0.5 retina
GCAGAAAATT
(
2
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
GCAGAAAATT
(
2
)
10.6
0.0106
P2.5 retina
TTTTTTTTTT (
433
)
7
0.007
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TTTTTTTTTT (
433
)
9.9
0.0099
P4.5 retina
GCAGAAAATT
(
2
)
4
0.004
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TTTTTTTTTT (
433
)
8.3
0.0083
P6.5 retina
GCAGAAAATT
(
2
)
3.3
0.0033
P6.5 retina
ATGTAGTTAT (
3
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GCAGAAAATT
(
2
)
5.6
0.0056
P10.5 crx- retina
ATCCTCTTGG
(
8
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
GCAGAAAATT
(
2
)
3.8
0.0038
P10.5 crx+ retina
GGCCAGGGCA (
5
)
3.8
0.0038
P10.5 crx+ retina
TTTTTTTTTT (
433
)
3.8
0.0038
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GGCCAGGGCA (
5
)
13
0.013
Adult retinal
TTTTTTTTTT (
433
)
7.4
0.0074
Adult retinal
GGCAAGGGTC (
6
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
GGCCAGGGCA (
5
)
19.2
0.0192
ONL
TTTTTTTTTT (
433
)
3.8
0.0038
