Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.295647
5730407K14Rik
RIKEN cDNA 5730407K14 gene
2
70479
Mm.295647
AI481716
expressed sequence AI481716
2
101113
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 84 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CAGTTATAAA (
7
)
31
0.031
P8 Cb GC
GGCGGCTGTG
(
5
)
1.6
0.0016
P8 Cb GC
GGGTGACCAA
(
4
)
1.6
0.0016
P8 Cb GC
TGGCCCTCTG (
8
)
1.6
0.0016
Cb medulloblastoma
CAGTTATAAA (
7
)
94.8
0.0948
Cb medulloblastoma
TGGCCCTCTG (
8
)
11.6
0.0116
Cb medulloblastoma
GGCGGCTGTG
(
5
)
6.9
0.0069
Cb medulloblastoma
GGCCTCTAAA
(
3
)
2.3
0.0023
Cb medulloblastoma
GGGGGCTGTG
(
5
)
2.3
0.0023
P8 GC+1d culture
CAGTTATAAA (
7
)
40
0.04
P8 GC+1d culture
TGGCCCTCTG (
8
)
8
0.008
P8 GC+1d culture
TCCGGCTCTC
(
3
)
4.6
0.0046
P8 GC+1d culture
GGGTGACCAA
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
CAGTTATAAA (
7
)
35.1
0.0351
P8 GC+SHH+1d culture
TCCGGCTCTC
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
GGCGGCTGTG
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
TGGCCCTCTG (
8
)
2.3
0.0023
3T3 fibroblasts
GGCGGCTGTG
(
5
)
14
0.014
3T3 fibroblasts
GGGGGCTGTG
(
5
)
7
0.007
3T3 fibroblasts
TCCGGCTCTC
(
3
)
7
0.007
3T3 fibroblasts
GGGTGACCAA
(
4
)
3.5
0.0035
E15 cortex
TCCGGCTCTC
(
3
)
9.9
0.0099
E15 cortex
GGCCTCTAAA
(
3
)
4.9
0.0049
E15 cortex
GGCGGCTGTG
(
5
)
4.9
0.0049
E15 cortex
TGGCCCTCTG (
8
)
4.9
0.0049
P1 cortex
TGGCCCTCTG (
8
)
13.6
0.0136
P1 cortex
CAGTTATAAA (
7
)
9.1
0.0091
P1 cortex
GGCCTCTAAA
(
3
)
4.5
0.0045
Hypothalamus
CAGTTATAAA (
7
)
43.5
0.0435
Hypothalamus
TGGCCCTCTG (
8
)
16.3
0.0163
Hypothalamus
GGCCTCTAAA
(
3
)
1.8
0.0018
Hypothalamus
GGCGGCTGTG
(
5
)
1.8
0.0018
Hypothalamus
GGGGGCTGTG
(
5
)
1.8
0.0018
Hypothalamus
TCCGGCTCTC
(
3
)
1.8
0.0018
E12.5 retina
CAGTTATAAA (
7
)
3.8
0.0038
E12.5 retina
GGGGGCTGTG
(
5
)
1.9
0.0019
E12.5 retina
TCCGGCTCTC
(
3
)
1.9
0.0019
E12.5 retina
TGGCCCTCTG (
8
)
1.9
0.0019
E14.5 retina
TCCGGCTCTC
(
3
)
7.3
0.0073
E16.5 retina
TCCGGCTCTC
(
3
)
7.2
0.0072
E16.5 retina
GGGGGCTGTG
(
5
)
3.6
0.0036
E16.5 retina
CAGTTATAAA (
7
)
1.8
0.0018
E18.5 retina
CAGTTATAAA (
7
)
14.6
0.0146
E18.5 retina
TGGCCCTCTG (
8
)
10.9
0.0109
E18.5 retina
GGCCTCTAAA
(
3
)
1.8
0.0018
E18.5 retina
GGGGGCTGTG
(
5
)
1.8
0.0018
P0.5 retina
CAGTTATAAA (
7
)
3.9
0.0039
P0.5 retina
TCCGGCTCTC
(
3
)
3.9
0.0039
P0.5 retina
TGGCCCTCTG (
8
)
3.9
0.0039
P0.5 retina
GGCGGCTGTG
(
5
)
2
0.002
P0.5 retina
GGGTGACCAA
(
4
)
2
0.002
P2.5 retina
CAGTTATAAA (
7
)
10.6
0.0106
P2.5 retina
GGCGGCTGTG
(
5
)
3.5
0.0035
P2.5 retina
TCCGGCTCTC
(
3
)
3.5
0.0035
P2.5 retina
GGGTGACCAA
(
4
)
1.8
0.0018
P2.5 retina
TGGCCCTCTG (
8
)
1.8
0.0018
P4.5 retina
CAGTTATAAA (
7
)
9.9
0.0099
P4.5 retina
TGGCCCTCTG (
8
)
7.9
0.0079
P4.5 retina
GGCCTCTAAA
(
3
)
2
0.002
P4.5 retina
GGCGGCTGTG
(
5
)
2
0.002
P6.5 retina
CAGTTATAAA (
7
)
20
0.02
P6.5 retina
TGGCCCTCTG (
8
)
8.3
0.0083
P6.5 retina
GGCGGCTGTG
(
5
)
5
0.005
P6.5 retina
GGCCTCTAAA
(
3
)
1.7
0.0017
P6.5 retina
TCCGGCTCTC
(
3
)
1.7
0.0017
P10.5 crx- retina
CAGTTATAAA (
7
)
11.1
0.0111
P10.5 crx- retina
GGGGGCTGTG
(
5
)
7.4
0.0074
P10.5 crx- retina
TCCGGCTCTC
(
3
)
7.4
0.0074
P10.5 crx- retina
TGGCCCTCTG (
8
)
5.6
0.0056
P10.5 crx- retina
GGCGGCTGTG
(
5
)
1.9
0.0019
P10.5 crx+ retina
CAGTTATAAA (
7
)
11.5
0.0115
P10.5 crx+ retina
TGGCCCTCTG (
8
)
9.6
0.0096
P10.5 crx+ retina
GGCGGCTGTG
(
5
)
3.8
0.0038
P10.5 crx+ retina
GGCCTCTAAA
(
3
)
1.9
0.0019
P10.5 crx+ retina
GGGGGCTGTG
(
5
)
1.9
0.0019
Adult retinal
CAGTTATAAA (
7
)
11.1
0.0111
Adult retinal
GGCCTCTAAA
(
3
)
3.7
0.0037
Adult retinal
GGCGGCTGTG
(
5
)
3.7
0.0037
Adult retinal
TCCGGCTCTC
(
3
)
3.7
0.0037
Adult retinal
TGGCCCTCTG (
8
)
1.9
0.0019
ONL
CAGTTATAAA (
7
)
7.7
0.0077
ONL
GGCCTCTAAA
(
3
)
1.9
0.0019
ONL
GGCGGCTGTG
(
5
)
1.9
0.0019
ONL
TGGCCCTCTG (
8
)
1.9
0.0019
