Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29584	Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	12		108156
Gene Ontology	amino acid biosynthesis | ATP binding | catalytic activity | folic acid and derivative biosynthesis | formate-tetrahydrofolate ligase activity | formyltetrahydrofolate dehydrogenase activity | histidine biosynthesis | histidine catabolism | hydrolase activity | ligase activity | methenyltetrahydrofolate cyclohydrolase activity | methionine biosynthesis | methylenetetrahydrofolate dehydrogenase (NADP+) activity | one-carbon compound metabolism | oxidoreductase activity | purine nucleotide biosynthesis
Human Homolog	MTHFD1[methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 30 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTATTTACA (2) 1.6 0.0016 Cb medulloblastoma AAATGAATTA (2) GCAGTCCTGG TCTATTTACA (2) 9.2 0.0092 P8 GC+1d culture AAATGAATTA (2) TCTATTTACA (2) 3.4 0.0034 P8 GC+SHH+1d culture TATAAATTAA TCTATTTACA (2) 2.4 0.0024 P1 cortex GCAGTCCTGG TCTATTTACA (2) 9 0.009 Hypothalamus AAATGAATTA (2) 1.8 0.0018 E12.5 retina CACACCCAAG TCTATTTACA (2) 9.4 0.0094 E14.5 retina TATAAATTAA TCTATTTACA (2) 9.1 0.0091 E16.5 retina TATAAATTAA TCTATTTACA (2) 10.9 0.0109 E18.5 retina TATAAATTAA 1.8 0.0018 P0.5 retina CACACCCAAG 2 0.002 P2.5 retina AAATGAATTA (2) GCAGTCCTGG TCTATTTACA (2) 5.4 0.0054 P4.5 retina TATAAATTAA TCTATTTACA (2) 4 0.004 P10.5 crx- retina TCTATTTACA (2) 1.9 0.0019 P10.5 crx+ retina AAATGAATTA (2) TATAAATTAA 3.8 0.0038 Adult retinal GCAGTCCTGG TCTATTTACA (2) 3.8 0.0038 ONL TATAAATTAA 1.9 0.0019