Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29586	Basp1	brain abundant, membrane attached signal protein 1	15		70350
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent
Human Homolog	BASP1[brain abundant, membrane attached signal protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 88 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCCGTGGTTG 158.2 0.1582 P8 Cb GC TGGACAAGCT (3) 44 0.044 P8 Cb GC AAAGATTAAT (2) 8.2 0.0082 P8 Cb GC CATTACTCGT 3.3 0.0033 P8 Cb GC TGGACCAGCT (9) 1.6 0.0016 Cb medulloblastoma AAAGATTAAT (2) 4.6 0.0046 Cb medulloblastoma TGGACAACCT (5) 2.3 0.0023 Cb medulloblastoma TGGACCAGCT (9) 2.3 0.0023 P8 GC+1d culture TCCGTGGTTG 206.6 0.2066 P8 GC+1d culture TGGACAAGCT (3) 90.2 0.0902 P8 GC+1d culture AAAGATTAAT (2) 10.3 0.0103 P8 GC+1d culture TATCTCAATG (3) 4.6 0.0046 P8 GC+1d culture CATTACTCGT 1.1 0.0011 P8 GC+SHH+1d culture TCCGTGGTTG 140.5 0.1405 P8 GC+SHH+1d culture TGGACAAGCT (3) 58.5 0.0585 P8 GC+SHH+1d culture CATTACTCGT 5.9 0.0059 P8 GC+SHH+1d culture AAAGATTAAT (2) 4.7 0.0047 P8 GC+SHH+1d culture TATCTCAATG (3) 2.3 0.0023 3T3 fibroblasts TCCGTGGTTG 38.6 0.0386 3T3 fibroblasts TGGACAAGCT (3) 7 0.007 3T3 fibroblasts TGGACCAGCT (9) 3.5 0.0035 E15 cortex TCCGTGGTTG 232.5 0.2325 E15 cortex TGGACAAGCT (3) 49.5 0.0495 E15 cortex TATCTCAATG (3) 9.9 0.0099 E15 cortex TTCGTGGTTG 4.9 0.0049 P1 cortex TCCGTGGTTG 168.2 0.1682 P1 cortex TGGACAAGCT (3) 159.1 0.1591 P1 cortex AAAGATTAAT (2) 18.2 0.0182 P1 cortex CATTACTCGT 13.6 0.0136 Hypothalamus TCCGTGGTTG 58 0.058 Hypothalamus TGGACAAGCT (3) 30.8 0.0308 Hypothalamus AAAGATTAAT (2) 16.3 0.0163 Hypothalamus CATTACTCGT 3.6 0.0036 Hypothalamus TATCTCAATG (3) 3.6 0.0036 E12.5 retina TCCGTGGTTG 67.6 0.0676 E12.5 retina TGGACAAGCT (3) 15 0.015 E12.5 retina AAAGATTAAT (2) 9.4 0.0094 E12.5 retina CATTACTCGT 3.8 0.0038 E14.5 retina TCCGTGGTTG 94.7 0.0947 E14.5 retina TGGACAAGCT (3) 23.7 0.0237 E14.5 retina AAAGATTAAT (2) 12.8 0.0128 E14.5 retina CATTACTCGT 5.5 0.0055 E14.5 retina TATCTCAATG (3) 1.8 0.0018 E16.5 retina TCCGTGGTTG 123.2 0.1232 E16.5 retina TGGACAAGCT (3) 27.2 0.0272 E16.5 retina CATTACTCGT 10.9 0.0109 E16.5 retina AAAGATTAAT (2) 5.4 0.0054 E16.5 retina TATCTCAATG (3) 1.8 0.0018 E18.5 retina TCCGTGGTTG 63.7 0.0637 E18.5 retina TGGACAAGCT (3) 25.5 0.0255 E18.5 retina AAAGATTAAT (2) 16.4 0.0164 E18.5 retina CATTACTCGT 12.7 0.0127 P0.5 retina TCCGTGGTTG 106 0.106 P0.5 retina TGGACAAGCT (3) 31.4 0.0314 P0.5 retina CATTACTCGT 7.9 0.0079 P0.5 retina AAAGATTAAT (2) 5.9 0.0059 P0.5 retina TATCTCAATG (3) 2 0.002 P0.5 retina TTCGTGGTTG 2 0.002 P2.5 retina TCCGTGGTTG 110.9 0.1109 P2.5 retina TGGACAAGCT (3) 22.9 0.0229 P2.5 retina AAAGATTAAT (2) 8.8 0.0088 P2.5 retina CATTACTCGT 3.5 0.0035 P2.5 retina TATCTCAATG (3) 3.5 0.0035 P2.5 retina TTCGTGGTTG 1.8 0.0018 P4.5 retina TCCGTGGTTG 81.2 0.0812 P4.5 retina TGGACAAGCT (3) 17.8 0.0178 P4.5 retina AAAGATTAAT (2) 9.9 0.0099 P4.5 retina CATTACTCGT 2 0.002 P4.5 retina TATCTCAATG (3) 2 0.002 P6.5 retina TCCGTGGTTG 116.7 0.1167 P6.5 retina TGGACAAGCT (3) 30 0.03 P6.5 retina AAAGATTAAT (2) 13.3 0.0133 P6.5 retina CATTACTCGT 3.3 0.0033 P6.5 retina TATCTCAATG (3) 1.7 0.0017 P10.5 crx- retina TCCGTGGTTG 85.5 0.0855 P10.5 crx- retina AAAGATTAAT (2) 5.6 0.0056 P10.5 crx- retina TGGACAAGCT (3) 3.7 0.0037 P10.5 crx+ retina TCCGTGGTTG 76.9 0.0769 P10.5 crx+ retina TGGACAAGCT (3) 11.5 0.0115 P10.5 crx+ retina AAAGATTAAT (2) 5.8 0.0058 P10.5 crx+ retina CATTACTCGT 3.8 0.0038 Adult retinal TCCGTGGTTG 29.6 0.0296 Adult retinal TGGACAAGCT (3) 3.7 0.0037 Adult retinal CATTACTCGT 1.9 0.0019 ONL TCCGTGGTTG 17.2 0.0172 ONL AAAGATTAAT (2) 3.8 0.0038 ONL TGGACAACCT (5) 1.9 0.0019 ONL TGGACAAGCT (3) 1.9 0.0019