Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.295878	Csna	casein alpha	5	5 44.9 cM	12990
Gene Ontology	extracellular | extracellular space | transport | transporter activity
Human Homolog	CSN1S1[casein alpha s1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 207 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTAACAGGA (4) 65.3 0.0653 P8 Cb GC TGTGTGTGTG (115) 27.7 0.0277 P8 Cb GC GGAAAAAAAA (69) 8.2 0.0082 P8 Cb GC CTCAACAAGC (5) 4.9 0.0049 P8 Cb GC AGAGGTGTGG 3.3 0.0033 P8 Cb GC AGTGGAGGGA (5) 3.3 0.0033 P8 Cb GC AAACATCTTC (2) 1.6 0.0016 P8 Cb GC AAATCTATGA (5) 1.6 0.0016 P8 Cb GC CATCCAGCCA (2) 1.6 0.0016 P8 Cb GC GAGTTTCTAA (3) 1.6 0.0016 P8 Cb GC GTCTCCAAGG (5) 1.6 0.0016 P8 Cb GC GTTCAGCAAA (5) 1.6 0.0016 P8 Cb GC TAACCTTCCC (2) 1.6 0.0016 Cb medulloblastoma TGTAACAGGA (4) 87.9 0.0879 Cb medulloblastoma GGAAAAAAAA (69) 41.6 0.0416 Cb medulloblastoma TGTGTGTGTG (115) 30.1 0.0301 Cb medulloblastoma AAACATCTTC (2) 4.6 0.0046 Cb medulloblastoma AGAGGTGTGG 4.6 0.0046 Cb medulloblastoma AGTGGAGGGA (5) 4.6 0.0046 Cb medulloblastoma CTCAACAAGC (5) 4.6 0.0046 Cb medulloblastoma GCTTCAGCAG (3) 4.6 0.0046 Cb medulloblastoma AGACAAAGAC (3) 2.3 0.0023 Cb medulloblastoma GAGTTTCTAA (3) 2.3 0.0023 Cb medulloblastoma GGCTCAGCAG (2) 2.3 0.0023 P8 GC+1d culture TGTAACAGGA (4) 75.3 0.0753 P8 GC+1d culture TGTGTGTGTG (115) 27.4 0.0274 P8 GC+1d culture CAGCACGACA (2) 6.8 0.0068 P8 GC+1d culture GTTCAGCAAA (5) 6.8 0.0068 P8 GC+1d culture GGAAAAAAAA (69) 5.7 0.0057 P8 GC+1d culture GAGTTTCTAA (3) 2.3 0.0023 P8 GC+1d culture AGTGGAGGGA (5) 1.1 0.0011 P8 GC+1d culture GGGCCCAAGC (13) 1.1 0.0011 P8 GC+1d culture GTCAGCAAGC (2) 1.1 0.0011 P8 GC+1d culture GTGTAGTGGG (2) 1.1 0.0011 P8 GC+1d culture TAACCTTCCC (2) 1.1 0.0011 P8 GC+1d culture TTTTTACCCT (2) 1.1 0.0011 P8 GC+SHH+1d culture TGTAACAGGA (4) 80.8 0.0808 P8 GC+SHH+1d culture TGTGTGTGTG (115) 28.1 0.0281 P8 GC+SHH+1d culture CAGCACGACA (2) 8.2 0.0082 P8 GC+SHH+1d culture GGAAAAAAAA (69) 7 0.007 P8 GC+SHH+1d culture GTTCAGCAAA (5) 5.9 0.0059 P8 GC+SHH+1d culture AGACAAAGAC (3) 2.3 0.0023 P8 GC+SHH+1d culture AGCCCTGTTA (4) 2.3 0.0023 P8 GC+SHH+1d culture GTCTCCAAGG (5) 2.3 0.0023 P8 GC+SHH+1d culture AGGGTGGGTC (3) 1.2 0.0012 P8 GC+SHH+1d culture AGTGGAGGGA (5) 1.2 0.0012 P8 GC+SHH+1d culture CATCCAGCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGTTTCTAA (3) 1.2 0.0012 P8 GC+SHH+1d culture GTGGTGTGGG (10) 1.2 0.0012 P8 GC+SHH+1d culture TTCTCTATTC 1.2 0.0012 P8 GC+SHH+1d culture TTTTTACCCT (2) 1.2 0.0012 3T3 fibroblasts TGTAACAGGA (4) 28 0.028 3T3 fibroblasts TGTGTGTGTG (115) 28 0.028 3T3 fibroblasts AGTGGAGGGA (5) 17.5 0.0175 3T3 fibroblasts GTTCAGCAAA (5) 10.5 0.0105 3T3 fibroblasts GCTCAGCAGC (4) 7 0.007 3T3 fibroblasts AAACATCTTC (2) 3.5 0.0035 3T3 fibroblasts CAGCACGACA (2) 3.5 0.0035 3T3 fibroblasts CTCAACAAGC (5) 3.5 0.0035 E15 cortex TGTAACAGGA (4) 29.7 0.0297 E15 cortex GGAAAAAAAA (69) 9.9 0.0099 E15 cortex GTCAGCAAGC (2) 9.9 0.0099 E15 cortex CAGCACGACA (2) 4.9 0.0049 E15 cortex GAGTTTCTAA (3) 4.9 0.0049 E15 cortex GTTCAGCAAA (5) 4.9 0.0049 P1 cortex TGTAACAGGA (4) 36.4 0.0364 P1 cortex GTTCAGCAAA (5) 18.2 0.0182 P1 cortex TGTGTGTGTG (115) 18.2 0.0182 P1 cortex AGTGGAGGGA (5) 4.5 0.0045 P1 cortex GGAAAAAAAA (69) 4.5 0.0045 P1 cortex GTCAGCAAGC (2) 4.5 0.0045 P1 cortex TTCTCTATTC 4.5 0.0045 P1 cortex TTGGGTAATC (3) 4.5 0.0045 Hypothalamus TGTAACAGGA (4) 168.4 0.1684 Hypothalamus TGTGTGTGTG (115) 25.4 0.0254 Hypothalamus GGAAAAAAAA (69) 14.5 0.0145 Hypothalamus AGTGGAGGGA (5) 3.6 0.0036 Hypothalamus CTCAACAAGC (5) 3.6 0.0036 Hypothalamus AAACATCTTC (2) 1.8 0.0018 Hypothalamus GAGTTTCTAA (3) 1.8 0.0018 Hypothalamus GGCTCAGCAG (2) 1.8 0.0018 Hypothalamus GTTCAGCAAA (5) 1.8 0.0018 Hypothalamus GTTCCAGGTA (2) 1.8 0.0018 Hypothalamus TTTTCAGAAA (6) 1.8 0.0018 E12.5 retina TGTAACAGGA (4) 63.8 0.0638 E12.5 retina TGTGTGTGTG (115) 43.2 0.0432 E12.5 retina GTTCAGCAAA (5) 9.4 0.0094 E12.5 retina AGTGGAGGGA (5) 5.6 0.0056 E12.5 retina AGCCCTGTTA (4) 3.8 0.0038 E12.5 retina AAATCTATGA (5) 1.9 0.0019 E12.5 retina AACACCTATA 1.9 0.0019 E12.5 retina GGAAAAAAAA (69) 1.9 0.0019 E12.5 retina GTGTAGTGGG (2) 1.9 0.0019 E12.5 retina TTTTCAGAAA (6) 1.9 0.0019 E14.5 retina TGTAACAGGA (4) 80.2 0.0802 E14.5 retina TGTGTGTGTG (115) 54.7 0.0547 E14.5 retina GGAAAAAAAA (69) 10.9 0.0109 E14.5 retina AAACATCTTC (2) 1.8 0.0018 E14.5 retina AGTGGAGGGA (5) 1.8 0.0018 E14.5 retina CTCAACAAGC (5) 1.8 0.0018 E14.5 retina GTCAGCAAGC (2) 1.8 0.0018 E14.5 retina GTGTAGTGGG (2) 1.8 0.0018 E14.5 retina GTTCAGCAAA (5) 1.8 0.0018 E16.5 retina TGTAACAGGA (4) 68.8 0.0688 E16.5 retina TGTGTGTGTG (115) 39.8 0.0398 E16.5 retina AGTGGAGGGA (5) 3.6 0.0036 E16.5 retina GCTCAGCAAT (2) 3.6 0.0036 E16.5 retina AAATCTATGA (5) 1.8 0.0018 E16.5 retina AGCCCTGTTA (4) 1.8 0.0018 E16.5 retina CTCAACAAGC (5) 1.8 0.0018 E16.5 retina GAGTTTCTAA (3) 1.8 0.0018 E16.5 retina GGAAAAAAAA (69) 1.8 0.0018 E16.5 retina GGCTCAGCAG (2) 1.8 0.0018 E16.5 retina GTCTCTCTAT (3) 1.8 0.0018 E16.5 retina GTGGTGTGGG (10) 1.8 0.0018 E18.5 retina TGTAACAGGA (4) 120.1 0.1201 E18.5 retina TGTGTGTGTG (115) 47.3 0.0473 E18.5 retina GGAAAAAAAA (69) 16.4 0.0164 E18.5 retina GTTCAGCAAA (5) 5.5 0.0055 E18.5 retina GAGTTTCTAA (3) 3.6 0.0036 E18.5 retina AGTGGAGGGA (5) 1.8 0.0018 E18.5 retina GCTTCAGCAG (3) 1.8 0.0018 E18.5 retina TTCTCTATTC 1.8 0.0018 P0.5 retina TGTAACAGGA (4) 49.1 0.0491 P0.5 retina TGTGTGTGTG (115) 21.6 0.0216 P0.5 retina GTTCAGCAAA (5) 17.7 0.0177 P0.5 retina AGTGGAGGGA (5) 15.7 0.0157 P0.5 retina GGAAAAAAAA (69) 13.7 0.0137 P0.5 retina GGGCCCAAGC (13) 7.9 0.0079 P0.5 retina GAGTTTCTAA (3) 3.9 0.0039 P0.5 retina AACACCTATA 2 0.002 P0.5 retina CTCAACAAGC (5) 2 0.002 P0.5 retina GCTCAGCAGC (4) 2 0.002 P0.5 retina GCTCAGCCAG (2) 2 0.002 P0.5 retina GGCTCAGCAG (2) 2 0.002 P0.5 retina GTCTCCAAGG (5) 2 0.002 P2.5 retina TGTAACAGGA (4) 98.5 0.0985 P2.5 retina TGTGTGTGTG (115) 35.2 0.0352 P2.5 retina GTTCAGCAAA (5) 8.8 0.0088 P2.5 retina GGAAAAAAAA (69) 7 0.007 P2.5 retina GAGTTTCTAA (3) 3.5 0.0035 P2.5 retina AGGGTGGGTC (3) 1.8 0.0018 P2.5 retina GTGGTGTGGG (10) 1.8 0.0018 P2.5 retina TAACCTTCCC (2) 1.8 0.0018 P4.5 retina TGTAACAGGA (4) 116.9 0.1169 P4.5 retina TGTGTGTGTG (115) 47.6 0.0476 P4.5 retina GGAAAAAAAA (69) 13.9 0.0139 P4.5 retina GTTCAGCAAA (5) 9.9 0.0099 P4.5 retina CTCAACAAGC (5) 2 0.002 P4.5 retina GAGTTTCTAA (3) 2 0.002 P4.5 retina GCTTCAGCAG (3) 2 0.002 P6.5 retina TGTAACAGGA (4) 88.4 0.0884 P6.5 retina TGTGTGTGTG (115) 41.7 0.0417 P6.5 retina GGAAAAAAAA (69) 13.3 0.0133 P6.5 retina GTTCAGCAAA (5) 6.7 0.0067 P6.5 retina AGTGGAGGGA (5) 5 0.005 P6.5 retina AGCCCTGTTA (4) 3.3 0.0033 P6.5 retina AGGGTGGGTC (3) 3.3 0.0033 P6.5 retina GTGGTGTGGG (10) 3.3 0.0033 P6.5 retina AACACCTATA 1.7 0.0017 P6.5 retina GAGTTTCTAA (3) 1.7 0.0017 P6.5 retina GCTCAGCAAT (2) 1.7 0.0017 P6.5 retina GCTTCAGCAG (3) 1.7 0.0017 P10.5 crx- retina TGTAACAGGA (4) 128.2 0.1282 P10.5 crx- retina TGTGTGTGTG (115) 59.4 0.0594 P10.5 crx- retina GTTCAGCAAA (5) 16.7 0.0167 P10.5 crx- retina AGTGGAGGGA (5) 11.1 0.0111 P10.5 crx- retina GAGTTTCTAA (3) 7.4 0.0074 P10.5 crx- retina TCTCTCTATT (3) 7.4 0.0074 P10.5 crx- retina GGAAAAAAAA (69) 3.7 0.0037 P10.5 crx- retina GTTCCAGGTA (2) 3.7 0.0037 P10.5 crx- retina AAACATCTTC (2) 1.9 0.0019 P10.5 crx- retina CTCAACAAGC (5) 1.9 0.0019 P10.5 crx- retina GCTTCAGCAG (3) 1.9 0.0019 P10.5 crx- retina GTGGTGTGGG (10) 1.9 0.0019 P10.5 crx- retina TTTTTACCCT (2) 1.9 0.0019 P10.5 crx+ retina TGTAACAGGA (4) 148 0.148 P10.5 crx+ retina TGTGTGTGTG (115) 44.2 0.0442 P10.5 crx+ retina GGAAAAAAAA (69) 15.4 0.0154 P10.5 crx+ retina GTTCAGCAAA (5) 9.6 0.0096 P10.5 crx+ retina GAGTTTCTAA (3) 7.7 0.0077 P10.5 crx+ retina AGTGGAGGGA (5) 3.8 0.0038 P10.5 crx+ retina AAACATCTTC (2) 1.9 0.0019 P10.5 crx+ retina AGGGTGGGTC (3) 1.9 0.0019 P10.5 crx+ retina GTGGTGTGGG (10) 1.9 0.0019 P10.5 crx+ retina TTCTCTATTC 1.9 0.0019 Adult retinal TGTAACAGGA (4) 61.1 0.0611 Adult retinal TGTGTGTGTG (115) 53.7 0.0537 Adult retinal GTTCAGCAAA (5) 14.8 0.0148 Adult retinal AGTGGAGGGA (5) 9.3 0.0093 Adult retinal GGAAAAAAAA (69) 5.6 0.0056 Adult retinal GTCTCTCTAT (3) 5.6 0.0056 Adult retinal TTGGGTAATC (3) 3.7 0.0037 Adult retinal AAACATCTTC (2) 1.9 0.0019 Adult retinal AGCCCTGTTA (4) 1.9 0.0019 Adult retinal GAGTTTCTAA (3) 1.9 0.0019 Adult retinal GGCTCAGCAG (2) 1.9 0.0019 ONL TGTAACAGGA (4) 47.9 0.0479 ONL TGTGTGTGTG (115) 23 0.023 ONL GGAAAAAAAA (69) 17.2 0.0172 ONL AGTGGAGGGA (5) 3.8 0.0038 ONL GCTCAGCAGC (4) 3.8 0.0038 ONL GTTCAGCAAA (5) 3.8 0.0038 ONL AGAGGTGTGG 1.9 0.0019 ONL CATCCAGCCA (2) 1.9 0.0019 ONL CTCAACAAGC (5) 1.9 0.0019 ONL TTTTCAGAAA (6) 1.9 0.0019