Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.296150	D11Bwg0414e	DNA segment, Chr 11, Brigham & Women's Genetics 0414 expressed	11	11 3.0 cM	76437
Mm.296150	Purb	purine rich element binding protein B	11		19291
Gene Ontology	DNA binding
Human Homolog	PURB[purine-rich element binding protein B]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTGCCCTTT (4) 4.9 0.0049 P8 Cb GC AAGTGCAGTA (2) 3.3 0.0033 P8 Cb GC GAAATAAAGT (6) 3.3 0.0033 P8 Cb GC GAACCTGGAC (5) 3.3 0.0033 P8 Cb GC GTTTCTCAGG (2) 3.3 0.0033 P8 Cb GC AAGTGCAGAA (5) 1.6 0.0016 P8 Cb GC CACATAAGTA (3) 1.6 0.0016 P8 Cb GC GAGAGTCAGT (2) 1.6 0.0016 P8 Cb GC TGGGAGAACA (5) 1.6 0.0016 Cb medulloblastoma GAAATAAAGT (6) 25.4 0.0254 Cb medulloblastoma CAGCTGTGTT (4) 11.6 0.0116 Cb medulloblastoma AAGTGCAGTA (2) 6.9 0.0069 Cb medulloblastoma CCTGCCCTTT (4) 4.6 0.0046 Cb medulloblastoma AAGTGCAGAA (5) 2.3 0.0023 Cb medulloblastoma GAACCTGGAC (5) 2.3 0.0023 Cb medulloblastoma GTTTCTCAGG (2) 2.3 0.0023 P8 GC+1d culture AAGTGCAGTA (2) 9.1 0.0091 P8 GC+1d culture CAGCTGTGTT (4) 6.8 0.0068 P8 GC+1d culture GAAATAAAGT (6) 5.7 0.0057 P8 GC+1d culture AGACCCTACC (4) 3.4 0.0034 P8 GC+1d culture CCTGCCCTTT (4) 3.4 0.0034 P8 GC+1d culture AAGTGCAGAA (5) 2.3 0.0023 P8 GC+1d culture GTTTCTCAGG (2) 2.3 0.0023 P8 GC+1d culture TGGGAGAACA (5) 2.3 0.0023 P8 GC+1d culture TCACTATCCA (2) 1.1 0.0011 P8 GC+SHH+1d culture GAAATAAAGT (6) 11.7 0.0117 P8 GC+SHH+1d culture AAGTGCAGTA (2) 3.5 0.0035 P8 GC+SHH+1d culture CCTGCCCTTT (4) 3.5 0.0035 P8 GC+SHH+1d culture CAGCTGTGTT (4) 2.3 0.0023 P8 GC+SHH+1d culture GAACCTGGAC (5) 2.3 0.0023 P8 GC+SHH+1d culture TGGGAGAACA (5) 2.3 0.0023 P8 GC+SHH+1d culture AAGTGCAGAA (5) 1.2 0.0012 3T3 fibroblasts AGTGGGAGCT (2) 7 0.007 3T3 fibroblasts CCTGCCCTTT (4) 3.5 0.0035 3T3 fibroblasts GTTTCTCAGG (2) 3.5 0.0035 E15 cortex AAGTGCAGAA (5) 4.9 0.0049 E15 cortex TGGGAGAACA (5) 4.9 0.0049 P1 cortex TGGGAGAACA (5) 9.1 0.0091 P1 cortex AAGTGCAGAA (5) 4.5 0.0045 P1 cortex GCTTCTCAGG (7) 4.5 0.0045 P1 cortex GTTTCTCAGG (2) 4.5 0.0045 Hypothalamus TGGGAGAACA (5) 16.3 0.0163 Hypothalamus GAAATAAAGT (6) 9.1 0.0091 Hypothalamus AAGTGCAGAA (5) 1.8 0.0018 Hypothalamus AGTGGGAGCT (2) 1.8 0.0018 Hypothalamus CCTGCCCTTT (4) 1.8 0.0018 Hypothalamus GCTTCTCAGG (7) 1.8 0.0018 E12.5 retina TGGGAGAACA (5) 63.8 0.0638 E12.5 retina GAAATAAAGT (6) 15 0.015 E12.5 retina CACATAAGTA (3) 3.8 0.0038 E12.5 retina AAGTGCAGAA (5) 1.9 0.0019 E12.5 retina GAGAGTCAGT (2) 1.9 0.0019 E12.5 retina GCTTCTCAGG (7) 1.9 0.0019 E12.5 retina TTGTACTTCA (3) 1.9 0.0019 E14.5 retina TGGGAGAACA (5) 72.9 0.0729 E14.5 retina GAAATAAAGT (6) 5.5 0.0055 E14.5 retina AAGTGCAGAA (5) 3.6 0.0036 E14.5 retina AGTGGGAGCT (2) 1.8 0.0018 E14.5 retina CAGCTGTGTT (4) 1.8 0.0018 E16.5 retina TGGGAGAACA (5) 126.8 0.1268 E16.5 retina GAAATAAAGT (6) 9.1 0.0091 E18.5 retina TGGGAGAACA (5) 163.7 0.1637 E18.5 retina GAAATAAAGT (6) 12.7 0.0127 E18.5 retina AAGTGCAGAA (5) 1.8 0.0018 E18.5 retina AAGTGCAGTA (2) 1.8 0.0018 E18.5 retina CAGCTGTGTT (4) 1.8 0.0018 P0.5 retina TGGGAGAACA (5) 123.6 0.1236 P0.5 retina AAGTGCAGTA (2) 2 0.002 P0.5 retina AGACCCTACC (4) 2 0.002 P0.5 retina AGTGGGAGCT (2) 2 0.002 P0.5 retina CCTGCCCTTT (4) 2 0.002 P0.5 retina GAAATAAAGT (6) 2 0.002 P0.5 retina GAGAGTCAGT (2) 2 0.002 P0.5 retina TCACTATCCA (2) 2 0.002 P2.5 retina TGGGAGAACA (5) 170.7 0.1707 P2.5 retina GAAATAAAGT (6) 8.8 0.0088 P2.5 retina CCTGCCCTTT (4) 1.8 0.0018 P4.5 retina TGGGAGAACA (5) 122.8 0.1228 P4.5 retina GAAATAAAGT (6) 25.8 0.0258 P4.5 retina AAGTGCAGTA (2) 2 0.002 P6.5 retina TGGGAGAACA (5) 35 0.035 P6.5 retina GAAATAAAGT (6) 13.3 0.0133 P6.5 retina CAGCTGTGTT (4) 6.7 0.0067 P6.5 retina AAGTGCAGAA (5) 3.3 0.0033 P6.5 retina AAGTGCAGTA (2) 3.3 0.0033 P6.5 retina CCTGCCCTTT (4) 1.7 0.0017 P6.5 retina TCACTATCCA (2) 1.7 0.0017 P10.5 crx- retina GAAATAAAGT (6) 18.6 0.0186 P10.5 crx- retina TGGGAGAACA (5) 18.6 0.0186 P10.5 crx- retina AAGTGCAGTA (2) 11.1 0.0111 P10.5 crx- retina CAGCTGTGTT (4) 3.7 0.0037 P10.5 crx- retina CACATAAGTA (3) 1.9 0.0019 P10.5 crx+ retina GAAATAAAGT (6) 17.3 0.0173 P10.5 crx+ retina CAGCTGTGTT (4) 13.5 0.0135 P10.5 crx+ retina TGGGAGAACA (5) 7.7 0.0077 P10.5 crx+ retina AAGTGCAGTA (2) 1.9 0.0019 P10.5 crx+ retina GAGAGTCAGT (2) 1.9 0.0019 Adult retinal GAAATAAAGT (6) 9.3 0.0093 Adult retinal AAGTGCAGTA (2) 7.4 0.0074 Adult retinal CAGCTGTGTT (4) 5.6 0.0056 Adult retinal GTTTCTCAGG (2) 3.7 0.0037 Adult retinal AAGTGCAGAA (5) 1.9 0.0019 Adult retinal CCTGCCCTTT (4) 1.9 0.0019 Adult retinal TGGGAGAACA (5) 1.9 0.0019 ONL GAAATAAAGT (6) 9.6 0.0096 ONL TTGTACTTCA (3) 7.7 0.0077 ONL GCTTCTCAGG (7) 5.7 0.0057 ONL AAGTGCAGAA (5) 1.9 0.0019 ONL AAGTGCAGTA (2) 1.9 0.0019 ONL CCTGCCCTTT (4) 1.9 0.0019 ONL GAACCTGGAC (5) 1.9 0.0019 ONL TCACTATCCA (2) 1.9 0.0019