Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.296366
Rai1
retinoic acid induced 1
11
19377
Gene Ontology
DNA binding
|
regulation of transcription, DNA-dependent
Human Homolog
RAI1[retinoic acid induced 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 70 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TTCAGGTGGT (
4
)
13.1
0.0131
P8 Cb GC
TAAAATAAAA
(
14
)
8.2
0.0082
P8 Cb GC
GCATCTGCCC (
2
)
4.9
0.0049
P8 Cb GC
CTCGCTTCTG
(
2
)
1.6
0.0016
P8 Cb GC
TGCCAATGAC
1.6
0.0016
Cb medulloblastoma
TAAAATAAAA
(
14
)
18.5
0.0185
Cb medulloblastoma
TTCAGGTGGT (
4
)
6.9
0.0069
Cb medulloblastoma
GCATCTGCCC (
2
)
4.6
0.0046
P8 GC+1d culture
TTCAGGTGGT (
4
)
13.7
0.0137
P8 GC+1d culture
TAAAATAAAA
(
14
)
12.6
0.0126
P8 GC+1d culture
GCATCTGCCC (
2
)
2.3
0.0023
P8 GC+SHH+1d culture
TTCAGGTGGT (
4
)
14.1
0.0141
P8 GC+SHH+1d culture
TAAAATAAAA
(
14
)
8.2
0.0082
P8 GC+SHH+1d culture
GCATCTGCCC (
2
)
3.5
0.0035
P8 GC+SHH+1d culture
TGCCAATGAC
2.3
0.0023
P8 GC+SHH+1d culture
CTCGCTTCTG
(
2
)
1.2
0.0012
3T3 fibroblasts
TTCAGGTGGT (
4
)
14
0.014
3T3 fibroblasts
CTCGCTTCTG
(
2
)
3.5
0.0035
E15 cortex
TTCAGGTGGT (
4
)
24.7
0.0247
P1 cortex
TAAAATAAAA
(
14
)
13.6
0.0136
P1 cortex
TTCAGGTGGT (
4
)
9.1
0.0091
Hypothalamus
TAAAATAAAA
(
14
)
12.7
0.0127
Hypothalamus
GCATCTGCCC (
2
)
3.6
0.0036
Hypothalamus
GCGCCTGCCT (
4
)
1.8
0.0018
Hypothalamus
TTCAGGTGGT (
4
)
1.8
0.0018
E12.5 retina
TTCAGGTGGT (
4
)
15
0.015
E12.5 retina
TAAAATAAAA
(
14
)
11.3
0.0113
E12.5 retina
GCATCTGCCC (
2
)
7.5
0.0075
E12.5 retina
CTCGCTTCTG
(
2
)
1.9
0.0019
E14.5 retina
TTCAGGTGGT (
4
)
20
0.02
E14.5 retina
TAAAATAAAA
(
14
)
3.6
0.0036
E14.5 retina
CTCGCTTCTG
(
2
)
1.8
0.0018
E14.5 retina
GCATCTGCCC (
2
)
1.8
0.0018
E14.5 retina
GGATTCAGGG
(
2
)
1.8
0.0018
E14.5 retina
TGCCAATGAC
1.8
0.0018
E16.5 retina
TTCAGGTGGT (
4
)
14.5
0.0145
E16.5 retina
TAAAATAAAA
(
14
)
5.4
0.0054
E16.5 retina
GCATCTGCCC (
2
)
1.8
0.0018
E16.5 retina
GCGCCTGCCT (
4
)
1.8
0.0018
E18.5 retina
TAAAATAAAA
(
14
)
14.6
0.0146
E18.5 retina
TTCAGGTGGT (
4
)
5.5
0.0055
E18.5 retina
GCATCTGCCC (
2
)
1.8
0.0018
E18.5 retina
GCGCCTGCCT (
4
)
1.8
0.0018
P0.5 retina
TTCAGGTGGT (
4
)
11.8
0.0118
P0.5 retina
CTCGCTTCTG
(
2
)
3.9
0.0039
P0.5 retina
GCATCTGCCC (
2
)
3.9
0.0039
P0.5 retina
TAAAATAAAA
(
14
)
2
0.002
P2.5 retina
TAAAATAAAA
(
14
)
8.8
0.0088
P2.5 retina
TTCAGGTGGT (
4
)
7
0.007
P2.5 retina
GCATCTGCCC (
2
)
3.5
0.0035
P2.5 retina
CTCGCTTCTG
(
2
)
1.8
0.0018
P4.5 retina
TAAAATAAAA
(
14
)
27.7
0.0277
P4.5 retina
TTCAGGTGGT (
4
)
15.9
0.0159
P4.5 retina
GCATCTGCCC (
2
)
2
0.002
P4.5 retina
GGATTCAGGG
(
2
)
2
0.002
P6.5 retina
TTCAGGTGGT (
4
)
13.3
0.0133
P6.5 retina
TAAAATAAAA
(
14
)
11.7
0.0117
P6.5 retina
CTCGCTTCTG
(
2
)
1.7
0.0017
P6.5 retina
GCATCTGCCC (
2
)
1.7
0.0017
P10.5 crx- retina
TTCAGGTGGT (
4
)
9.3
0.0093
P10.5 crx- retina
GCATCTGCCC (
2
)
5.6
0.0056
P10.5 crx- retina
TAAAATAAAA
(
14
)
5.6
0.0056
P10.5 crx+ retina
GCATCTGCCC (
2
)
1.9
0.0019
P10.5 crx+ retina
GGATTCAGGG
(
2
)
1.9
0.0019
P10.5 crx+ retina
TAAAATAAAA
(
14
)
1.9
0.0019
Adult retinal
GCATCTGCCC (
2
)
7.4
0.0074
Adult retinal
TTCAGGTGGT (
4
)
3.7
0.0037
ONL
TAAAATAAAA
(
14
)
7.7
0.0077
ONL
GCATCTGCCC (
2
)
1.9
0.0019
ONL
TTCAGGTGGT (
4
)
1.9
0.0019
