Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.296520	Vps35	vacuolar protein sorting 35	8	8 38.0 cM	65114
Gene Ontology	integral to membrane | protein transport | secretory pathway | transport | vacuolar protein processing/maturation
Human Homolog	VPS35[vacuolar protein sorting 35 (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 100 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCCCACAC GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA 248 0.248 Cb medulloblastoma CATTAAAAAA (2) GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA TGCACTGCTG 138.7 0.1387 P8 GC+1d culture GATTTGTACT (2) GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA TGCACTGCTG 132.3 0.1323 P8 GC+SHH+1d culture GATTTGTACT (2) GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA TGCACTGCTG 159.3 0.1593 3T3 fibroblasts GCCTTCCAAT GCGACTCCAG GGATTTGTAC (3) GTCAGAAGCA TGCACTGCTG 35 0.035 E15 cortex GCCTTCCAAT GGATTTGTAC (3) GTCAGAAGCA GTGGTTGAAA 103.8 0.1038 P1 cortex ACTGATCTGC GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA 45.4 0.0454 Hypothalamus CATTAAAAAA (2) GCCTTCCAAT GGATTTGTAC (3) GTCAGAAGCA GTGGTTGAAA 77.8 0.0778 E12.5 retina GATTTGTACT (2) GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA TGCACTGCTG 159.7 0.1597 E14.5 retina ACTGATCTGC GCCTTCCAAT GGATTTGTAC (3) GTCAGAAGCA GTGGTTGAAA TTGACCAAAA 138.4 0.1384 E16.5 retina ACTGATCTGC GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA TTGACCAAAA 121.3 0.1213 E18.5 retina ACTGATCTGC GCCTTCCAAT GGATTTGTAC (3) GTGGTTGAAA TGCACTGCTG 272.7 0.2727 P0.5 retina CATTAAAAAA (2) GATTTGTACT (2) GCCTTCCAAT GGATTTGTAC (3) GTCAGAAGCA GTGGTTGAAA 257.2 0.2572 P2.5 retina ACTGATCTGC GCCTTCCAAT GGATTTGTAC (3) GTCAGAAGCA GTGGTTGAAA 209.6 0.2096 P4.5 retina GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA 253.6 0.2536 P6.5 retina GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA TGCACTGCTG 193.5 0.1935 P10.5 crx- retina GATTTGTACT (2) GCCTTCCAAT GCGACTCCAG GTCAGAAGCA GTGGTTGAAA TGCACTGCTG 81.8 0.0818 P10.5 crx+ retina ACTGATCTGC GATTTGTACT (2) GCCTTCCAAT GTCAGAAGCA GTGGTTGAAA TGCACTGCTG TTGACCAAAA 138.3 0.1383 Adult retinal GATTTGTACT (2) GCCTTCCAAT GCGACTCCAG GGATTTGTAC (3) GTCAGAAGCA GTGGTTGAAA 126 0.126 ONL CATTAAAAAA (2) GCAGAAGCAG (2) GCCTTCCAAT GTCAGAAGCA TTGACCAAAA 134 0.134