Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.297883	Clcn4-2	chloride channel 4-2	7	7 4.0 cM	12727
Gene Ontology	chloride transport | integral to membrane | ion channel activity | ion transport | membrane | voltage-gated chloride channel activity | voltage-gated ion channel activity
Human Homolog	CLCN4[chloride channel 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 58 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTAATTAGC (2) 4.9 0.0049 P8 Cb GC GGGGTGTGAA (2) 3.3 0.0033 P8 Cb GC CTACTGTTAG 1.6 0.0016 Cb medulloblastoma TCCCTGCAAA (2) 4.6 0.0046 Cb medulloblastoma CTACTGTTAG 2.3 0.0023 Cb medulloblastoma GCTGAACTCT (2) 2.3 0.0023 P8 GC+1d culture TTTAATTAGC (2) 4.6 0.0046 P8 GC+1d culture GGGGTGTGAA (2) 2.3 0.0023 P8 GC+1d culture CTACTGTTAG 1.1 0.0011 P8 GC+1d culture GCCAGTCCAG 1.1 0.0011 P8 GC+1d culture TCCCTGCAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture TCCCTGCAAA (2) 3.5 0.0035 P8 GC+SHH+1d culture GGGGTGTGAA (2) 2.3 0.0023 P8 GC+SHH+1d culture TTTAATTAGC (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCAGTCCAG 1.2 0.0012 3T3 fibroblasts GGGGTGTGAA (2) 3.5 0.0035 E15 cortex GGGGTGTGAA (2) 4.9 0.0049 P1 cortex GCCAGTCCAG 4.5 0.0045 P1 cortex TCCCTAAAAA (3) 4.5 0.0045 P1 cortex TTTAATTAGC (2) 4.5 0.0045 Hypothalamus GGGGTGTGAA (2) 3.6 0.0036 Hypothalamus ATGAGGAGTG 1.8 0.0018 Hypothalamus GCCAGTCCAG 1.8 0.0018 Hypothalamus TCCCTGCAAA (2) 1.8 0.0018 E12.5 retina GGGGTGTGAA (2) 3.8 0.0038 E14.5 retina ACTGTGGAGG (2) 1.8 0.0018 E16.5 retina GCCAGTCCAG 3.6 0.0036 E16.5 retina GGGGTGTGAA (2) 3.6 0.0036 E16.5 retina TCCCTGCAAA (2) 3.6 0.0036 E16.5 retina GCTGAACTCT (2) 1.8 0.0018 E16.5 retina TTTAATTAGC (2) 1.8 0.0018 E18.5 retina TCCCTGCAAA (2) 5.5 0.0055 E18.5 retina ACTGTGGAGG (2) 1.8 0.0018 E18.5 retina ATGAGGAGTG 1.8 0.0018 E18.5 retina CTACTGTTAG 1.8 0.0018 E18.5 retina GGGGTGTGAA (2) 1.8 0.0018 P0.5 retina ACTGTGGAGG (2) 2 0.002 P0.5 retina TCCCTAAAAA (3) 2 0.002 P2.5 retina CTACTGTTAG 1.8 0.0018 P2.5 retina GGGGTGTGAA (2) 1.8 0.0018 P4.5 retina TCCCTGCAAA (2) 5.9 0.0059 P4.5 retina GGGGTGTGAA (2) 4 0.004 P4.5 retina TTTAATTAGC (2) 4 0.004 P6.5 retina TCCCTGCAAA (2) 3.3 0.0033 P6.5 retina TTTAATTAGC (2) 3.3 0.0033 P6.5 retina TCCCTAAAAA (3) 1.7 0.0017 P10.5 crx- retina GGGGTGTGAA (2) 1.9 0.0019 P10.5 crx+ retina GGGGTGTGAA (2) 3.8 0.0038 P10.5 crx+ retina TCCCTGCAAA (2) 3.8 0.0038 P10.5 crx+ retina GCTGAACTCT (2) 1.9 0.0019 Adult retinal ATGAGGAGTG 3.7 0.0037 Adult retinal TCCCTGCAAA (2) 3.7 0.0037 Adult retinal TTTAATTAGC (2) 3.7 0.0037 Adult retinal GCCAGTCCAG 1.9 0.0019 ONL ATGAGGAGTG 3.8 0.0038 ONL TCCCTAAAAA (3) 3.8 0.0038 ONL TCCCTGCAAA (2) 1.9 0.0019 ONL TTTAATTAGC (2) 1.9 0.0019