Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29827	AL033314	expressed sequence AL033314	6		56463
Gene Ontology	biological_process unknown | cellular_component unknown | nucleic acid binding
Human Homolog	SND1[staphylococcal nuclease domain containing 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 127 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTTCTTTCGT (3) 37.5 0.0375 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC AAAGACTTTG (3) 1.6 0.0016 P8 Cb GC AACCTTTCTT (7) 1.6 0.0016 P8 Cb GC GTTCTTTCCT (6) 1.6 0.0016 P8 Cb GC GTTTGAGGCC (4) 1.6 0.0016 Cb medulloblastoma GTTCTTTCGT (3) 16.2 0.0162 Cb medulloblastoma GGCTGTCCTG (5) 4.6 0.0046 Cb medulloblastoma GTTTGAGGCC (4) 4.6 0.0046 Cb medulloblastoma AAAGACTTTG (3) 2.3 0.0023 Cb medulloblastoma CCTCAGGGAT (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture GTTCTTTCGT (3) 24 0.024 P8 GC+1d culture GGCTGTCCTG (5) 13.7 0.0137 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GTTCTTTCCT (6) 9.1 0.0091 P8 GC+1d culture CCTCAGGGAT (2) 4.6 0.0046 P8 GC+1d culture AAAGACTTTT (3) 3.4 0.0034 P8 GC+1d culture GTTTGAGGCC (4) 2.3 0.0023 P8 GC+1d culture AAAGACTTTG (3) 1.1 0.0011 P8 GC+SHH+1d culture GTTCTTTCGT (3) 31.6 0.0316 P8 GC+SHH+1d culture GGCTGTCCTG (5) 10.5 0.0105 P8 GC+SHH+1d culture GTTCTTTCCT (6) 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture CCTCAGGGAT (2) 4.7 0.0047 P8 GC+SHH+1d culture TGAATGTGGA (3) 2.3 0.0023 P8 GC+SHH+1d culture AAAGACTTTG (3) 1.2 0.0012 P8 GC+SHH+1d culture AACCTTTCTT (7) 1.2 0.0012 P8 GC+SHH+1d culture GTGGAGGTGC (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTTGAGGCC (4) 1.2 0.0012 3T3 fibroblasts GGCTGTCCTG (5) 31.5 0.0315 3T3 fibroblasts GTTCTTTCGT (3) 21 0.021 3T3 fibroblasts CCTCAGGGAT (2) 14 0.014 3T3 fibroblasts GTGGAGGTGC (4) 7 0.007 E15 cortex GGCTGTCCTG (5) 34.6 0.0346 E15 cortex GTTCTTTCGT (3) 14.8 0.0148 E15 cortex AAAGACTTTG (3) 9.9 0.0099 E15 cortex CCTCAGGGAT (2) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GGCTGTCCTG (5) 18.2 0.0182 P1 cortex AACCTTTCTT (7) 4.5 0.0045 P1 cortex GTTCTTTCGT (3) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GTTCTTTCGT (3) 5.4 0.0054 Hypothalamus GGCTGTCCTG (5) 3.6 0.0036 Hypothalamus GTTCTTTCCT (6) 1.8 0.0018 Hypothalamus GTTTGAGGCC (4) 1.8 0.0018 E12.5 retina GTTCTTTCGT (3) 26.3 0.0263 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GGCTGTCCTG (5) 5.6 0.0056 E12.5 retina AAAGACTTTG (3) 3.8 0.0038 E12.5 retina GTTCTTTCCT (6) 3.8 0.0038 E12.5 retina GTTTGAGGCC (4) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GTTCTTTCGT (3) 20 0.02 E14.5 retina GGCTGTCCTG (5) 3.6 0.0036 E14.5 retina GTTCTTTCCT (6) 3.6 0.0036 E14.5 retina GTTTGAGGCC (4) 3.6 0.0036 E14.5 retina CCTCAGGGAT (2) 1.8 0.0018 E14.5 retina TGAATGTGGA (3) 1.8 0.0018 E16.5 retina GTTCTTTCGT (3) 10.9 0.0109 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina AAAGACTTTG (3) 3.6 0.0036 E16.5 retina GTTCTTTCCT (6) 3.6 0.0036 E16.5 retina AAAGACTTTT (3) 1.8 0.0018 E16.5 retina AACCTTTCTT (7) 1.8 0.0018 E16.5 retina CCTCAGGGAT (2) 1.8 0.0018 E16.5 retina GGCTGTCCTG (5) 1.8 0.0018 E16.5 retina GTTTGAGGCC (4) 1.8 0.0018 E18.5 retina GTTCTTTCGT (3) 29.1 0.0291 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GTTTGAGGCC (4) 7.3 0.0073 E18.5 retina GGCTGTCCTG (5) 5.5 0.0055 E18.5 retina AAAGACTTTT (3) 1.8 0.0018 P0.5 retina GGCTGTCCTG (5) 31.4 0.0314 P0.5 retina GTTCTTTCGT (3) 29.4 0.0294 P0.5 retina CCTCAGGGAT (2) 15.7 0.0157 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina AAAGACTTTG (3) 3.9 0.0039 P0.5 retina TGTGGGGGTG (6) 3.9 0.0039 P0.5 retina AAAGACTTTT (3) 2 0.002 P2.5 retina GTTCTTTCGT (3) 31.7 0.0317 P2.5 retina GGCTGTCCTG (5) 14.1 0.0141 P2.5 retina GTTCTTTCCT (6) 10.6 0.0106 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina CCTCAGGGAT (2) 5.3 0.0053 P2.5 retina AAAGACTTTG (3) 1.8 0.0018 P2.5 retina GTTTGAGGCC (4) 1.8 0.0018 P4.5 retina GTTCTTTCGT (3) 21.8 0.0218 P4.5 retina GGCTGTCCTG (5) 11.9 0.0119 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina GTTCTTTCCT (6) 2 0.002 P4.5 retina GTTTGAGGCC (4) 2 0.002 P4.5 retina TGTGGGGGTG (6) 2 0.002 P6.5 retina GTTCTTTCGT (3) 26.7 0.0267 P6.5 retina GGCTGTCCTG (5) 16.7 0.0167 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GTTTGAGGCC (4) 5 0.005 P6.5 retina GTTCTTTCCT (6) 3.3 0.0033 P6.5 retina CCTCAGGGAT (2) 1.7 0.0017 P6.5 retina TGAATGTGGA (3) 1.7 0.0017 P10.5 crx- retina GTTCTTTCGT (3) 24.2 0.0242 P10.5 crx- retina CCTCAGGGAT (2) 16.7 0.0167 P10.5 crx- retina AAAGACTTTG (3) 9.3 0.0093 P10.5 crx- retina GGCTGTCCTG (5) 3.7 0.0037 P10.5 crx- retina GTTTGAGGCC (4) 3.7 0.0037 P10.5 crx+ retina GTTCTTTCGT (3) 30.8 0.0308 P10.5 crx+ retina GGCTGTCCTG (5) 9.6 0.0096 P10.5 crx+ retina GTTCTTTCCT (6) 3.8 0.0038 P10.5 crx+ retina GTTTGAGGCC (4) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina CCTCAGGGAT (2) 1.9 0.0019 P10.5 crx+ retina TGAATGTGGA (3) 1.9 0.0019 Adult retinal GGCTGTCCTG (5) 46.3 0.0463 Adult retinal GTTCTTTCGT (3) 18.5 0.0185 Adult retinal CCTCAGGGAT (2) 9.3 0.0093 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GTTTGAGGCC (4) 5.6 0.0056 Adult retinal AAAGACTTTG (3) 1.9 0.0019 Adult retinal GTGGAGGTGC (4) 1.9 0.0019 ONL GTTCTTTCGT (3) 13.4 0.0134 ONL GGCTGTCCTG (5) 7.7 0.0077 ONL CCTCAGGGAT (2) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL GTTTGAGGCC (4) 1.9 0.0019 ONL TGAATGTGGA (3) 1.9 0.0019