Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.298300	Dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16	17		69192
Gene Ontology	ATP binding | ATP dependent helicase activity | ATPase activity | helicase activity | hydrolase activity | mRNA processing | nuclear mRNA splicing, via spliceosome | nucleic acid binding | nucleus | regulation of cell cycle | RNA helicase activity | RNA splicing
Human Homolog	DHX16[DEAH (Asp-Glu-Ala-His) box polypeptide 16]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 118 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAACTCTGG (6) 4.9 0.0049 P8 Cb GC CCCAAGGAGA (4) 3.3 0.0033 P8 Cb GC GACCAAACCT (2) 3.3 0.0033 P8 Cb GC AAATGATTAT (3) 1.6 0.0016 P8 Cb GC CTGGGTAAAG (3) 1.6 0.0016 P8 Cb GC TTGTCTAAAA (5) 1.6 0.0016 Cb medulloblastoma CTGGGTAAAG (3) 9.2 0.0092 Cb medulloblastoma GGAACTCTGG (6) 9.2 0.0092 Cb medulloblastoma GCAGAGGCAG (2) 4.6 0.0046 Cb medulloblastoma TTGTCCAAAA (2) 4.6 0.0046 Cb medulloblastoma AAATGATTAT (3) 2.3 0.0023 Cb medulloblastoma TTGTCTAAAA (5) 2.3 0.0023 P8 GC+1d culture CCCAAGGAGA (4) 5.7 0.0057 P8 GC+1d culture CTGGGTAAAG (3) 4.6 0.0046 P8 GC+1d culture GACCAAACCT (2) 4.6 0.0046 P8 GC+1d culture GGAACTCTGG (6) 3.4 0.0034 P8 GC+1d culture AAATGATTAT (3) 2.3 0.0023 P8 GC+1d culture GCAGAGGCAG (2) 1.1 0.0011 P8 GC+1d culture TTGTCCAAAA (2) 1.1 0.0011 P8 GC+1d culture TTGTCTAAAA (5) 1.1 0.0011 P8 GC+SHH+1d culture CTGGGTAAAG (3) 7 0.007 P8 GC+SHH+1d culture GCAGAGGCAG (2) 4.7 0.0047 P8 GC+SHH+1d culture GACCAAACCT (2) 3.5 0.0035 P8 GC+SHH+1d culture AAATGATTAT (3) 2.3 0.0023 P8 GC+SHH+1d culture CCCAAGGAGA (4) 2.3 0.0023 P8 GC+SHH+1d culture GGAACTCTGG (6) 1.2 0.0012 P8 GC+SHH+1d culture TCACTCTCTA (4) 1.2 0.0012 P8 GC+SHH+1d culture TTGTCCAAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGTCTAAAA (5) 1.2 0.0012 3T3 fibroblasts CCCAAGGAGA (4) 38.6 0.0386 E15 cortex CCCAAGGAGA (4) 4.9 0.0049 E15 cortex GGAACTCTGG (6) 4.9 0.0049 P1 cortex AGCTTGGCCT (3) 27.3 0.0273 P1 cortex CCCAAGGAGA (4) 4.5 0.0045 P1 cortex CTGGGTAAAG (3) 4.5 0.0045 P1 cortex TTGTCTAAAA (5) 4.5 0.0045 Hypothalamus CTGGGTAAAG (3) 23.5 0.0235 Hypothalamus AGCTTGGCCT (3) 7.2 0.0072 Hypothalamus GGAACTCTGG (6) 7.2 0.0072 Hypothalamus CCCAAGGAGA (4) 3.6 0.0036 Hypothalamus ATGGAAAGAA (12) 1.8 0.0018 Hypothalamus GACCAAACCT (2) 1.8 0.0018 Hypothalamus GCATTACCCA (2) 1.8 0.0018 E12.5 retina GACCAAACCT (2) 5.6 0.0056 E12.5 retina CCCAAGGAGA (4) 3.8 0.0038 E12.5 retina CTGGGTAAAG (3) 3.8 0.0038 E12.5 retina GGAACTCTGG (6) 3.8 0.0038 E12.5 retina GCAGAGGCAG (2) 1.9 0.0019 E12.5 retina GCATTACCCA (2) 1.9 0.0019 E14.5 retina GACCAAACCT (2) 7.3 0.0073 E14.5 retina GGAACTCTGG (6) 3.6 0.0036 E14.5 retina ATGGAAAGAA (12) 1.8 0.0018 E14.5 retina CCCAAGGAGA (4) 1.8 0.0018 E14.5 retina CTGGGTAAAG (3) 1.8 0.0018 E14.5 retina GCAGAGGCAG (2) 1.8 0.0018 E14.5 retina TCACTCTCTA (4) 1.8 0.0018 E14.5 retina TTGTCTAAAA (5) 1.8 0.0018 E16.5 retina GACCAAACCT (2) 12.7 0.0127 E16.5 retina CTGGGTAAAG (3) 7.2 0.0072 E16.5 retina GGAACTCTGG (6) 7.2 0.0072 E16.5 retina CCCAAGGAGA (4) 3.6 0.0036 E16.5 retina GCAGAGGCAG (2) 1.8 0.0018 E18.5 retina GGAACTCTGG (6) 7.3 0.0073 E18.5 retina CTGGGTAAAG (3) 5.5 0.0055 E18.5 retina TTGTCTAAAA (5) 5.5 0.0055 E18.5 retina GACCAAACCT (2) 3.6 0.0036 E18.5 retina TTGTCCAAAA (2) 3.6 0.0036 E18.5 retina GCAGAGGCAG (2) 1.8 0.0018 P0.5 retina CCCAAGGAGA (4) 7.9 0.0079 P0.5 retina GCAGAGGCAG (2) 7.9 0.0079 P0.5 retina GGAACTCTGG (6) 5.9 0.0059 P0.5 retina AGCTTGGCCT (3) 3.9 0.0039 P0.5 retina CTGGGTAAAG (3) 3.9 0.0039 P0.5 retina GACCAAACCT (2) 3.9 0.0039 P0.5 retina ATGGAAAGAA (12) 2 0.002 P0.5 retina GCATTACCCA (2) 2 0.002 P0.5 retina TTGTCCAAAA (2) 2 0.002 P2.5 retina CTGGGTAAAG (3) 12.3 0.0123 P2.5 retina GGAACTCTGG (6) 10.6 0.0106 P2.5 retina GACCAAACCT (2) 7 0.007 P2.5 retina GCAGAGGCAG (2) 3.5 0.0035 P2.5 retina AGCTTGGCCT (3) 1.8 0.0018 P2.5 retina CCCAAGGAGA (4) 1.8 0.0018 P2.5 retina CTAAGAAAAT (8) 1.8 0.0018 P2.5 retina GGAACTTTGG (6) 1.8 0.0018 P4.5 retina CTGGGTAAAG (3) 13.9 0.0139 P4.5 retina GGAACTCTGG (6) 7.9 0.0079 P4.5 retina GACCAAACCT (2) 4 0.004 P6.5 retina CTGGGTAAAG (3) 13.3 0.0133 P6.5 retina GGAACTCTGG (6) 11.7 0.0117 P6.5 retina CCCAAGGAGA (4) 6.7 0.0067 P6.5 retina AGCTTGGCCT (3) 3.3 0.0033 P6.5 retina ATGGAAAGAA (12) 1.7 0.0017 P6.5 retina CTAAGAAAAT (8) 1.7 0.0017 P6.5 retina GACCAAACCT (2) 1.7 0.0017 P6.5 retina GCATTACCCA (2) 1.7 0.0017 P6.5 retina TCACTCTCTA (4) 1.7 0.0017 P10.5 crx- retina CTGGGTAAAG (3) 11.1 0.0111 P10.5 crx- retina CCCAAGGAGA (4) 5.6 0.0056 P10.5 crx- retina GGAACTCTGG (6) 5.6 0.0056 P10.5 crx- retina CTAAGAAAAT (8) 3.7 0.0037 P10.5 crx- retina GACCAAACCT (2) 3.7 0.0037 P10.5 crx+ retina CTGGGTAAAG (3) 7.7 0.0077 P10.5 crx+ retina GCAGAGGCAG (2) 5.8 0.0058 P10.5 crx+ retina GGAACTCTGG (6) 5.8 0.0058 P10.5 crx+ retina GACCAAACCT (2) 3.8 0.0038 P10.5 crx+ retina AGCTTGGCCT (3) 1.9 0.0019 P10.5 crx+ retina CCCAAGGAGA (4) 1.9 0.0019 Adult retinal CTGGGTAAAG (3) 11.1 0.0111 Adult retinal CCCAAGGAGA (4) 5.6 0.0056 Adult retinal GGAACTCTGG (6) 1.9 0.0019 ONL CCCAAGGAGA (4) 9.6 0.0096 ONL CTGGGTAAAG (3) 5.7 0.0057 ONL GCAGAGGCAG (2) 5.7 0.0057 ONL GGAACTTTGG (6) 5.7 0.0057 ONL GACCAAACCT (2) 3.8 0.0038 ONL GCATTACCCA (2) 1.9 0.0019 ONL GGAACTCTGG (6) 1.9 0.0019