Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29890	Shmt2	serine hydroxymethyl transferase 2 (mitochondrial)	10		108037
Gene Ontology	glycine hydroxymethyltransferase activity | methyltransferase activity | mitochondrion | mitochondrion | mitochondrion | one-carbon compound metabolism | transferase activity
Human Homolog	SHMT2[serine hydroxymethyltransferase 2 (mitochondrial)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 122 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGTGGAAG ACACCCAACT ACACCCGACT GCTGCCAGGG TTGTAAAATA (2) 122.3 0.1223 Cb medulloblastoma AAGGTGGAAG GCTGCCAGGG TTGTAAAATA (2) 48.5 0.0485 P8 GC+1d culture AAAGAGTCTG AAGGTGGAAG ACACCCAACT ACACCCGACT CAGTGGGCTT (2) GCCCACATCA (2) GCTGCCAGGG GCTGCCCGGC (2) GGGAAGCCCC 134.6 0.1346 P8 GC+SHH+1d culture AAGGTGGAAG ACACCCGACT CAGCCTGGGA GCTGCCAGGG GTGCAAACCT 127.6 0.1276 3T3 fibroblasts AAAGAGTCTG AAGGTGGAAG ACACCCGACT GCCCACATCA (2) GCTGCCAGGG GCTGCCCGGC (2) 192.7 0.1927 E15 cortex AAGGTGGAAG ACACCCGACT GCTGCCAGGG GCTGCCCAGG (3) 89 0.089 P1 cortex AAAGAGTCTG AAGGTGGAAG ACACCCGACT GCCCACATCA (2) GCTGCCAGGG 58.9 0.0589 Hypothalamus AAGGTGGAAG GCCCACATCA (2) GCTGCCAGGG GCTGCCCGGC (2) GGCCACATCA (2) 52.4 0.0524 E12.5 retina AAGGTGGAAG ACACCCGACT CAGCCTGGGA CAGTGGGCTT (2) GCCCACATCA (2) GCTGCCAGGG GGGAAGCCCC 236.7 0.2367 E14.5 retina AAGGTGGAAG ACACCCAACT ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GCTGCCAGGG GCTGCCCGGC (2) GGCCACATCA (2) GGGAAGCCCC 98.3 0.0983 E16.5 retina AAGGTGGAAG ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GCTGCCAGGG GCTGCCCAGG (3) GGCCACATCA (2) GGGAAGCCCC GTGCAAACCT 181.1 0.1811 E18.5 retina AAGGTGGAAG ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GCTGCCAGGG GGCCACATCA (2) 100 0.1 P0.5 retina AAGGTGGAAG ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GCCCACATCA (2) GCTGCCAGGG TTGTAAAATA (2) 147.2 0.1472 P2.5 retina AAAGAGTCTG AAGGTGGAAG ACACCCGACT CAGTGGGCTT (2) GCTGCCAGGG GGCCACATCA (2) 123.3 0.1233 P4.5 retina AAAGAGTCTG AAGGTGGAAG ACACCCGACT CAGTGGGCTT (2) GCTGCCAGGG GCTGCCCGGC (2) GGCCACATCA (2) TTGTAAAATA (2) 117 0.117 P6.5 retina AAGGTGGAAG ACACCCGACT CAGTGGGCTT (2) GCTGCCAGGG GCTGCCCGGC (2) TTGTAAAATA (2) 90.1 0.0901 P10.5 crx- retina AAAGAGTCTG AAGGTGGAAG ACACCCGACT GCTGCCAGGG GCTGCCCAGG (3) GCTGCCCGGC (2) TTGTAAAATA (2) 174.7 0.1747 P10.5 crx+ retina AAGGTGGAAG ACACCCGACT CAGTGGGCTT (2) GCTGCCAGGG GCTGCCCGGC (2) GGCCACATCA (2) 90.3 0.0903 Adult retinal AAGGTGGAAG ACACCCGACT GCTGCCAGGG GCTGCCCAGG (3) GTGCAAACCT 55.6 0.0556 ONL AAGGTGGAAG GCTGCCAGGG GGGAAGCCCC TTGTAAAATA (2) 95.8 0.0958